Analysis of interatomic Contacts of Structural Units in PDB entry:
8TR2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TR2 entry

There are 2 chains in PDB entry 8TR2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 30	LYS 832
B	ARG 30	LYS 832

There are 52 helices in PDB entry 8TR2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	82	Right-handed alpha
Helix 2	AA2	A	101	109	Right-handed alpha
Helix 3	AA3	A	110	118	Right-handed alpha
Helix 4	AA4	A	150	162	Right-handed alpha
Helix 5	AA5	A	175	180	Right-handed 310
Helix 6	AA6	A	194	203	Right-handed alpha
Helix 7	AA7	A	203	208	Right-handed alpha
Helix 8	AA8	A	223	236	Right-handed alpha
Helix 9	AA9	A	257	265	Right-handed alpha
Helix 10	AB1	A	277	292	Right-handed alpha
Helix 11	AB2	A	313	317	Right-handed 310
Helix 12	AB3	A	330	339	Right-handed alpha
Helix 13	AB4	A	350	360	Right-handed alpha
Helix 14	AB5	A	387	389	Right-handed 310
Helix 15	AB6	A	390	412	Right-handed alpha
Helix 16	AB7	A	419	423	Right-handed 310
Helix 17	AB8	A	426	433	Right-handed alpha
Helix 18	AB9	A	434	438	Right-handed 310
Helix 19	AC1	A	449	451	Right-handed 310
Helix 20	AC2	A	577	602	Right-handed alpha
Helix 21	AC3	A	610	630	Right-handed alpha
Helix 22	AC4	A	641	665	Right-handed alpha
Helix 23	AC5	A	687	707	Right-handed alpha
Helix 24	AC6	A	736	759	Right-handed alpha
Helix 25	AC7	A	766	790	Right-handed alpha
Helix 26	AC8	A	802	827	Right-handed alpha
Helix 27	AC9	B	65	82	Right-handed alpha
Helix 28	AD1	B	101	109	Right-handed alpha
Helix 29	AD2	B	110	118	Right-handed alpha
Helix 30	AD3	B	150	162	Right-handed alpha
Helix 31	AD4	B	175	180	Right-handed 310
Helix 32	AD5	B	194	203	Right-handed alpha
Helix 33	AD6	B	203	208	Right-handed alpha
Helix 34	AD7	B	223	236	Right-handed alpha
Helix 35	AD8	B	257	265	Right-handed alpha
Helix 36	AD9	B	277	292	Right-handed alpha
Helix 37	AE1	B	313	317	Right-handed 310
Helix 38	AE2	B	330	339	Right-handed alpha
Helix 39	AE3	B	350	360	Right-handed alpha
Helix 40	AE4	B	387	389	Right-handed 310
Helix 41	AE5	B	390	412	Right-handed alpha
Helix 42	AE6	B	419	423	Right-handed 310
Helix 43	AE7	B	426	433	Right-handed alpha
Helix 44	AE8	B	434	438	Right-handed 310
Helix 45	AE9	B	449	451	Right-handed 310
Helix 46	AF1	B	577	602	Right-handed alpha
Helix 47	AF2	B	610	630	Right-handed alpha
Helix 48	AF3	B	641	665	Right-handed alpha
Helix 49	AF4	B	687	707	Right-handed alpha
Helix 50	AF5	B	736	759	Right-handed alpha
Helix 51	AF6	B	766	790	Right-handed alpha
Helix 52	AF7	B	802	827	Right-handed alpha

There are 12 sheets in PDB entry 8TR2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	91	97	anti-parallel
Strand 3	A	39	45	parallel
Strand 4	A	142	146	parallel
Strand 5	A	168	170	parallel
Strand 6	A	187	189	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	57	60	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	246	first strand
Strand 2	A	212	217	parallel
Strand 3	A	271	275	parallel
Strand 4	A	296	299	parallel
Strand 5	A	321	325	parallel
Strand 6	A	465	473	anti-parallel
Strand 7	A	478	487	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	441	first strand
Strand 2	A	453	454	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	520	first strand
Strand 2	A	530	533	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	542	first strand
Strand 2	A	545	546	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	39	45	parallel
Strand 4	B	142	146	parallel
Strand 5	B	168	170	parallel
Strand 6	B	187	189	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	57	60	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	246	first strand
Strand 2	B	212	217	parallel
Strand 3	B	271	275	parallel
Strand 4	B	296	299	parallel
Strand 5	B	321	325	parallel
Strand 6	B	465	473	anti-parallel
Strand 7	B	478	487	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	441	first strand
Strand 2	B	453	454	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	520	first strand
Strand 2	B	530	533	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	542	first strand
Strand 2	B	545	546	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TR2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TR2