Analysis of interatomic Contacts of Structural Units in PDB entry:
8TR3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TR3 entry

There are 12 chains in PDB entry 8TR3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 34	ARG 502
B	GLY 514	ASN 655
H	GLN 1	SER 113
L	ASP 1	ARG 108
C	LEU 34	ARG 502
D	GLY 514	ASN 655
I	GLN 1	SER 113
M	ASP 1	ARG 108
E	LEU 34	ARG 502
F	GLY 514	ASN 655
J	GLN 1	SER 113
N	ASP 1	ARG 108

There are 42 helices in PDB entry 8TR3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	99	116	Right-handed alpha
Helix 2	AA2	A	335	353	Right-handed alpha
Helix 3	AA3	A	387	391	Right-handed 310
Helix 4	AA4	A	476	481	Right-handed alpha
Helix 5	AA5	B	515	522	Right-handed alpha
Helix 6	AA6	B	529	536	Right-handed alpha
Helix 7	AA7	B	536	546	Right-handed alpha
Helix 8	AA8	B	562	596	Right-handed alpha
Helix 9	AA9	B	618	626	Right-handed alpha
Helix 10	AB1	B	627	636	Right-handed alpha
Helix 11	AB2	B	638	655	Right-handed alpha
Helix 12	AB3	H	28	31	Right-handed 310
Helix 13	AB4	H	83	87	Right-handed 310
Helix 14	AB5	L	79	83	Right-handed 310
Helix 15	AB6	C	99	116	Right-handed alpha
Helix 16	AB7	C	335	353	Right-handed alpha
Helix 17	AB8	C	387	391	Right-handed 310
Helix 18	AB9	C	476	481	Right-handed alpha
Helix 19	AC1	D	515	522	Right-handed alpha
Helix 20	AC2	D	529	536	Right-handed alpha
Helix 21	AC3	D	536	546	Right-handed alpha
Helix 22	AC4	D	562	596	Right-handed alpha
Helix 23	AC5	D	618	626	Right-handed alpha
Helix 24	AC6	D	627	636	Right-handed alpha
Helix 25	AC7	D	638	655	Right-handed alpha
Helix 26	AC8	I	28	31	Right-handed 310
Helix 27	AC9	I	83	87	Right-handed 310
Helix 28	AD1	M	79	83	Right-handed 310
Helix 29	AD2	E	99	116	Right-handed alpha
Helix 30	AD3	E	335	353	Right-handed alpha
Helix 31	AD4	E	387	391	Right-handed 310
Helix 32	AD5	E	476	481	Right-handed alpha
Helix 33	AD6	F	515	522	Right-handed alpha
Helix 34	AD7	F	529	536	Right-handed alpha
Helix 35	AD8	F	536	546	Right-handed alpha
Helix 36	AD9	F	562	596	Right-handed alpha
Helix 37	AE1	F	618	626	Right-handed alpha
Helix 38	AE2	F	627	636	Right-handed alpha
Helix 39	AE3	F	638	655	Right-handed alpha
Helix 40	AE4	J	28	31	Right-handed 310
Helix 41	AE5	J	83	87	Right-handed 310
Helix 42	AE6	N	79	83	Right-handed 310

There are 30 sheets in PDB entry 8TR3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	40	first strand
Strand 2	A	494	499	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	227	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	86	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	216	218	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	444	456	anti-parallel
Strand 3	A	465	470	anti-parallel
Strand 4	A	357	361	parallel
Strand 5	A	394	395	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	287	anti-parallel
Strand 3	A	444	456	anti-parallel
Strand 4	A	293	297	anti-parallel
Strand 5	A	330	334	anti-parallel
Strand 6	A	413	415	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	377	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	418	421	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	93	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	20	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	65	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	40	first strand
Strand 2	C	494	499	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	227	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	86	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	53	56	parallel
Strand 3	C	216	218	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	261	first strand
Strand 2	C	444	456	anti-parallel
Strand 3	C	465	470	anti-parallel
Strand 4	C	357	361	parallel
Strand 5	C	394	395	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	284	287	anti-parallel
Strand 3	C	444	456	anti-parallel
Strand 4	C	293	297	anti-parallel
Strand 5	C	330	334	anti-parallel
Strand 6	C	413	415	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	377	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	418	421	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	17	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	93	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	45	52	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	6	first strand
Strand 2	M	20	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	65	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	14	first strand
Strand 2	M	102	107	parallel
Strand 3	M	84	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	45	49	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	40	first strand
Strand 2	E	494	499	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	46	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	227	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	84	86	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	53	56	parallel
Strand 3	E	216	218	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	261	first strand
Strand 2	E	444	456	anti-parallel
Strand 3	E	465	470	anti-parallel
Strand 4	E	357	361	parallel
Strand 5	E	394	395	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	287	anti-parallel
Strand 3	E	444	456	anti-parallel
Strand 4	E	293	297	anti-parallel
Strand 5	E	330	334	anti-parallel
Strand 6	E	413	415	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	377	first strand
Strand 2	E	382	385	anti-parallel
Strand 3	E	418	421	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	17	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	111	parallel
Strand 3	J	88	93	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	45	52	anti-parallel
Strand 6	J	57	59	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	6	first strand
Strand 2	N	20	25	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	65	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	14	first strand
Strand 2	N	102	107	parallel
Strand 3	N	84	90	anti-parallel
Strand 4	N	33	38	anti-parallel
Strand 5	N	45	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TR3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TR3