Analysis of interatomic Contacts of Structural Units in PDB entry:
8TR9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TR9 entry

There is 1 chain in PDB entry 8TR9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ALA 687
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8TR9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 21Right-handed alpha
Helix 2
AA2
A
153 161Right-handed alpha
Helix 3
AA3
A
188 198Right-handed alpha
Helix 4
AA4
A
200 206Right-handed alpha
Helix 5
AA5
A
206 214Right-handed alpha
Helix 6
AA6
A
216 227Right-handed alpha
Helix 7
AA7
A
244 248Right-handed 310
Helix 8
AA8
A
250 254Right-handed 310
Helix 9
AA9
A
256 267Right-handed alpha
Helix 10
AB1
A
276 292Right-handed alpha
Helix 11
AB2
A
376 381Right-handed alpha
Helix 12
AB3
A
389 399Right-handed alpha
Helix 13
AB4
A
449 459Right-handed alpha
Helix 14
AB5
A
547 552Right-handed alpha
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There are 11 sheets in PDB entry 8TR9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
39 45anti-parallel
Strand 3
A
99 105anti-parallel
Strand 4
A
89 96anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
134 138parallel
Strand 3
A
113 123anti-parallel
Strand 4
A
55 63anti-parallel
Strand 5
A
75 78anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
134 138parallel
Strand 3
A
113 123anti-parallel
Strand 4
A
126 129anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 170first strand
Strand 2
A
175 181anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
272 275parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
353 357anti-parallel
Strand 3
A
332 342anti-parallel
Strand 4
A
295 303anti-parallel
Strand 5
A
426 429anti-parallel
Strand 6
A
436 438anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 317first strand
Strand 2
A
400 406parallel
Strand 3
A
412 417anti-parallel
Strand 4
A
575 583parallel
Strand 5
A
560 568anti-parallel
Strand 6
A
503 514anti-parallel
Strand 7
A
520 534anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 478first strand
Strand 2
A
489 496anti-parallel
Strand 3
A
539 546anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 594first strand
Strand 2
A
603 610anti-parallel
Strand 3
A
647 654anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 637first strand
Strand 2
A
621 625anti-parallel
Strand 3
A
665 668anti-parallel
Strand 4
A
676 678anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
660 663first strand
Strand 2
A
681 684anti-parallel
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