Analysis of interatomic Contacts of Structural Units in PDB entry:
8TRC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TRC entry

There are 2 chains in PDB entry 8TRC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 31LYS 822
B
 ARG 31LYS 822
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8TRC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 82Right-handed alpha
Helix 2
AA2
A
101 116Right-handed alpha
Helix 3
AA3
A
150 164Right-handed alpha
Helix 4
AA4
A
176 180Right-handed 310
Helix 5
AA5
A
194 205Right-handed alpha
Helix 6
AA6
A
221 236Right-handed alpha
Helix 7
AA7
A
252 265Right-handed alpha
Helix 8
AA8
A
277 292Right-handed alpha
Helix 9
AA9
A
306 310Right-handed 310
Helix 10
AB1
A
313 318Right-handed alpha
Helix 11
AB2
A
330 339Right-handed alpha
Helix 12
AB3
A
349 359Right-handed alpha
Helix 13
AB4
A
389 412Right-handed alpha
Helix 14
AB5
A
419 424Right-handed 310
Helix 15
AB6
A
426 433Right-handed alpha
Helix 16
AB7
A
434 438Right-handed 310
Helix 17
AB8
A
449 453Right-handed 310
Helix 18
AB9
A
493 497Right-handed 310
Helix 19
AC1
A
577 598Right-handed alpha
Helix 20
AC2
A
610 634Right-handed alpha
Helix 21
AC3
A
639 667Right-handed alpha
Helix 22
AC4
A
686 711Right-handed alpha
Helix 23
AC5
A
734 756Right-handed alpha
Helix 24
AC6
A
757 759Right-handed 310
Helix 25
AC7
A
769 792Right-handed alpha
Helix 26
AC8
A
797 818Right-handed alpha
Helix 27
AC9
B
65 82Right-handed alpha
Helix 28
AD1
B
101 116Right-handed alpha
Helix 29
AD2
B
150 164Right-handed alpha
Helix 30
AD3
B
176 180Right-handed 310
Helix 31
AD4
B
194 205Right-handed alpha
Helix 32
AD5
B
221 236Right-handed alpha
Helix 33
AD6
B
252 265Right-handed alpha
Helix 34
AD7
B
277 292Right-handed alpha
Helix 35
AD8
B
306 310Right-handed 310
Helix 36
AD9
B
313 318Right-handed alpha
Helix 37
AE1
B
330 339Right-handed alpha
Helix 38
AE2
B
349 359Right-handed alpha
Helix 39
AE3
B
389 412Right-handed alpha
Helix 40
AE4
B
419 424Right-handed 310
Helix 41
AE5
B
426 433Right-handed alpha
Helix 42
AE6
B
434 438Right-handed 310
Helix 43
AE7
B
449 453Right-handed 310
Helix 44
AE8
B
493 497Right-handed 310
Helix 45
AE9
B
577 598Right-handed alpha
Helix 46
AF1
B
610 634Right-handed alpha
Helix 47
AF2
B
639 667Right-handed alpha
Helix 48
AF3
B
686 711Right-handed alpha
Helix 49
AF4
B
734 756Right-handed alpha
Helix 50
AF5
B
757 759Right-handed 310
Helix 51
AF6
B
769 792Right-handed alpha
Helix 52
AF7
B
797 818Right-handed alpha
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There are 12 sheets in PDB entry 8TRC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 97first strand
Strand 2
A
39 45parallel
Strand 3
A
142 145parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
246 247parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
467 468anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 472first strand
Strand 2
A
479 480anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 520first strand
Strand 2
A
531 532anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
718 719first strand
Strand 2
A
727 728anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 97first strand
Strand 2
B
39 45parallel
Strand 3
B
142 145parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 218first strand
Strand 2
B
246 247parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 324first strand
Strand 2
B
467 468anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
471 472first strand
Strand 2
B
479 480anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
519 520first strand
Strand 2
B
531 532anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
718 719first strand
Strand 2
B
727 728anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il