Analysis of interatomic Contacts of Structural Units in PDB entry:
8TRD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TRD entry

There are 2 chains in PDB entry 8TRD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 33	VAL 823
B	ILE 33	VAL 823

There are 50 helices in PDB entry 8TRD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	82	Right-handed alpha
Helix 2	AA2	A	101	117	Right-handed alpha
Helix 3	AA3	A	150	164	Right-handed alpha
Helix 4	AA4	A	175	179	Right-handed 310
Helix 5	AA5	A	194	208	Right-handed alpha
Helix 6	AA6	A	220	237	Right-handed alpha
Helix 7	AA7	A	252	265	Right-handed alpha
Helix 8	AA8	A	277	292	Right-handed alpha
Helix 9	AA9	A	306	311	Right-handed alpha
Helix 10	AB1	A	330	339	Right-handed alpha
Helix 11	AB2	A	350	359	Right-handed alpha
Helix 12	AB3	A	389	412	Right-handed alpha
Helix 13	AB4	A	419	423	Right-handed 310
Helix 14	AB5	A	426	435	Right-handed alpha
Helix 15	AB6	A	494	496	Right-handed 310
Helix 16	AB7	A	497	502	Right-handed alpha
Helix 17	AB8	A	573	596	Right-handed alpha
Helix 18	AB9	A	612	633	Right-handed alpha
Helix 19	AC1	A	639	667	Right-handed alpha
Helix 20	AC2	A	688	710	Right-handed alpha
Helix 21	AC3	A	733	757	Right-handed alpha
Helix 22	AC4	A	764	792	Right-handed alpha
Helix 23	AC5	A	795	800	Right-handed alpha
Helix 24	AC6	A	803	816	Right-handed alpha
Helix 25	AC7	B	65	82	Right-handed alpha
Helix 26	AC8	B	101	117	Right-handed alpha
Helix 27	AC9	B	150	162	Right-handed alpha
Helix 28	AD1	B	175	179	Right-handed 310
Helix 29	AD2	B	194	208	Right-handed alpha
Helix 30	AD3	B	220	225	Right-handed alpha
Helix 31	AD4	B	226	235	Right-handed alpha
Helix 32	AD5	B	236	238	Right-handed 310
Helix 33	AD6	B	252	265	Right-handed alpha
Helix 34	AD7	B	277	291	Right-handed alpha
Helix 35	AD8	B	330	339	Right-handed alpha
Helix 36	AD9	B	350	359	Right-handed alpha
Helix 37	AE1	B	380	384	Right-handed 310
Helix 38	AE2	B	389	412	Right-handed alpha
Helix 39	AE3	B	419	423	Right-handed 310
Helix 40	AE4	B	426	435	Right-handed alpha
Helix 41	AE5	B	574	596	Right-handed alpha
Helix 42	AE6	B	612	633	Right-handed alpha
Helix 43	AE7	B	637	660	Right-handed alpha
Helix 44	AE8	B	687	710	Right-handed alpha
Helix 45	AE9	B	736	758	Right-handed alpha
Helix 46	AF1	B	764	774	Right-handed alpha
Helix 47	AF2	B	774	790	Right-handed alpha
Helix 48	AF3	B	795	800	Right-handed alpha
Helix 49	AF4	B	800	805	Right-handed alpha
Helix 50	AF5	B	809	813	Right-handed 310

There are 10 sheets in PDB entry 8TRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	93	97	anti-parallel
Strand 3	A	40	45	parallel
Strand 4	A	142	147	parallel
Strand 5	A	168	170	parallel
Strand 6	A	188	189	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	246	first strand
Strand 2	A	212	217	parallel
Strand 3	A	271	274	parallel
Strand 4	A	296	299	parallel
Strand 5	A	321	325	parallel
Strand 6	A	466	468	anti-parallel
Strand 7	A	484	486	anti-parallel
Strand 8	A	490	492	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	441	first strand
Strand 2	A	453	454	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	472	first strand
Strand 2	A	479	480	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	520	first strand
Strand 2	A	531	532	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	39	45	parallel
Strand 4	B	142	145	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	188	189	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	247	first strand
Strand 2	B	212	218	parallel
Strand 3	B	271	274	parallel
Strand 4	B	296	299	parallel
Strand 5	B	321	325	parallel
Strand 6	B	466	471	anti-parallel
Strand 7	B	480	486	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	441	first strand
Strand 2	B	453	454	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	520	first strand
Strand 2	B	531	533	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TRD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TRD