Analysis of interatomic Contacts of Structural Units in PDB entry:
8TRF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TRF entry

There are 4 chains in PDB entry 8TRF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7ALA 280
B
 GLU 7ALA 280
C
 GLU 7ALA 280
D
 ALA 6ALA 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8TRF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 21Right-handed 310
Helix 2
AA2
A
59 73Right-handed alpha
Helix 3
AA3
A
90 94Right-handed 310
Helix 4
AA4
A
95 110Right-handed alpha
Helix 5
AA5
A
122 134Right-handed alpha
Helix 6
AA6
A
159 164Right-handed alpha
Helix 7
AA7
A
165 169Right-handed 310
Helix 8
AA8
A
170 180Right-handed alpha
Helix 9
AA9
A
198 206Right-handed alpha
Helix 10
AB1
A
232 242Right-handed alpha
Helix 11
AB2
A
262 279Right-handed alpha
Helix 12
AB3
B
17 21Right-handed 310
Helix 13
AB4
B
59 73Right-handed alpha
Helix 14
AB5
B
90 94Right-handed 310
Helix 15
AB6
B
95 110Right-handed alpha
Helix 16
AB7
B
122 134Right-handed alpha
Helix 17
AB8
B
159 164Right-handed alpha
Helix 18
AB9
B
165 169Right-handed 310
Helix 19
AC1
B
170 181Right-handed alpha
Helix 20
AC2
B
198 206Right-handed alpha
Helix 21
AC3
B
232 242Right-handed alpha
Helix 22
AC4
B
262 279Right-handed alpha
Helix 23
AC5
C
17 21Right-handed 310
Helix 24
AC6
C
59 73Right-handed alpha
Helix 25
AC7
C
90 94Right-handed 310
Helix 26
AC8
C
95 111Right-handed alpha
Helix 27
AC9
C
121 134Right-handed alpha
Helix 28
AD1
C
159 164Right-handed alpha
Helix 29
AD2
C
165 169Right-handed 310
Helix 30
AD3
C
170 180Right-handed alpha
Helix 31
AD4
C
198 206Right-handed alpha
Helix 32
AD5
C
232 242Right-handed alpha
Helix 33
AD6
C
262 279Right-handed alpha
Helix 34
AD7
D
17 21Right-handed 310
Helix 35
AD8
D
59 73Right-handed alpha
Helix 36
AD9
D
90 94Right-handed 310
Helix 37
AE1
D
95 111Right-handed alpha
Helix 38
AE2
D
122 134Right-handed alpha
Helix 39
AE3
D
159 164Right-handed alpha
Helix 40
AE4
D
165 169Right-handed 310
Helix 41
AE5
D
170 179Right-handed alpha
Helix 42
AE6
D
198 205Right-handed alpha
Helix 43
AE7
D
206 208Right-handed 310
Helix 44
AE8
D
232 242Right-handed alpha
Helix 45
AE9
D
262 279Right-handed alpha
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There are 7 sheets in PDB entry 8TRF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
22 29anti-parallel
Strand 3
A
75 79anti-parallel
Strand 4
A
46 50parallel
Strand 5
A
115 120parallel
Strand 6
A
148 154parallel
Strand 7
A
220 225parallel
Strand 8
A
248 253parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
194 197anti-parallel
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There are 16 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 15first strand
Strand 2
B
22 29anti-parallel
Strand 3
B
75 79anti-parallel
Strand 4
B
46 50parallel
Strand 5
B
114 120parallel
Strand 6
B
147 154parallel
Strand 7
B
220 225parallel
Strand 8
B
248 253parallel
Strand 9
C
248 253anti-parallel
Strand 10
C
220 225parallel
Strand 11
C
148 154parallel
Strand 12
C
115 120parallel
Strand 13
C
46 50parallel
Strand 14
C
76 79parallel
Strand 15
C
22 29anti-parallel
Strand 16
C
10 15anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 185first strand
Strand 2
B
194 197anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 185first strand
Strand 2
C
194 197anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 15first strand
Strand 2
D
22 29anti-parallel
Strand 3
D
75 79anti-parallel
Strand 4
D
46 50parallel
Strand 5
D
115 120parallel
Strand 6
D
148 154parallel
Strand 7
D
220 225parallel
Strand 8
D
248 253parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
182 185first strand
Strand 2
D
194 197anti-parallel
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