Analysis of interatomic Contacts of Structural Units in PDB entry:
8TRM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TRM entry

There are 3 chains in PDB entry 8TRM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 6	PHE 376
B	VAL 6	PHE 376
C	VAL 6	PHE 376

There are 63 helices in PDB entry 8TRM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	62	Right-handed alpha
Helix 2	AA2	A	79	93	Right-handed alpha
Helix 3	AA3	A	113	127	Right-handed alpha
Helix 4	AA4	A	138	146	Right-handed alpha
Helix 5	AA5	A	173	176	Right-handed 310
Helix 6	AA6	A	182	194	Right-handed alpha
Helix 7	AA7	A	195	198	Right-handed 310
Helix 8	AA8	A	203	218	Right-handed alpha
Helix 9	AA9	A	223	232	Right-handed alpha
Helix 10	AB1	A	253	258	Right-handed alpha
Helix 11	AB2	A	259	263	Right-handed 310
Helix 12	AB3	A	264	269	Right-handed 310
Helix 13	AB4	A	274	285	Right-handed alpha
Helix 14	AB5	A	290	297	Right-handed alpha
Helix 15	AB6	A	302	306	Right-handed 310
Helix 16	AB7	A	309	322	Right-handed alpha
Helix 17	AB8	A	335	337	Right-handed 310
Helix 18	AB9	A	338	349	Right-handed alpha
Helix 19	AC1	A	350	356	Right-handed 310
Helix 20	AC2	A	360	367	Right-handed alpha
Helix 21	AC3	A	369	375	Right-handed alpha
Helix 22	AC4	B	56	62	Right-handed alpha
Helix 23	AC5	B	79	93	Right-handed alpha
Helix 24	AC6	B	113	127	Right-handed alpha
Helix 25	AC7	B	138	146	Right-handed alpha
Helix 26	AC8	B	173	176	Right-handed 310
Helix 27	AC9	B	182	194	Right-handed alpha
Helix 28	AD1	B	195	198	Right-handed 310
Helix 29	AD2	B	203	218	Right-handed alpha
Helix 30	AD3	B	223	232	Right-handed alpha
Helix 31	AD4	B	253	258	Right-handed alpha
Helix 32	AD5	B	259	263	Right-handed 310
Helix 33	AD6	B	264	269	Right-handed 310
Helix 34	AD7	B	274	285	Right-handed alpha
Helix 35	AD8	B	290	297	Right-handed alpha
Helix 36	AD9	B	302	306	Right-handed 310
Helix 37	AE1	B	309	322	Right-handed alpha
Helix 38	AE2	B	335	337	Right-handed 310
Helix 39	AE3	B	338	349	Right-handed alpha
Helix 40	AE4	B	350	356	Right-handed 310
Helix 41	AE5	B	360	367	Right-handed alpha
Helix 42	AE6	B	369	375	Right-handed alpha
Helix 43	AE7	C	56	62	Right-handed alpha
Helix 44	AE8	C	79	93	Right-handed alpha
Helix 45	AE9	C	113	127	Right-handed alpha
Helix 46	AF1	C	138	146	Right-handed alpha
Helix 47	AF2	C	173	176	Right-handed 310
Helix 48	AF3	C	182	194	Right-handed alpha
Helix 49	AF4	C	195	198	Right-handed 310
Helix 50	AF5	C	203	218	Right-handed alpha
Helix 51	AF6	C	223	232	Right-handed alpha
Helix 52	AF7	C	253	258	Right-handed alpha
Helix 53	AF8	C	259	263	Right-handed 310
Helix 54	AF9	C	264	269	Right-handed 310
Helix 55	AG1	C	274	285	Right-handed alpha
Helix 56	AG2	C	290	297	Right-handed alpha
Helix 57	AG3	C	302	306	Right-handed 310
Helix 58	AG4	C	309	322	Right-handed alpha
Helix 59	AG5	C	335	337	Right-handed 310
Helix 60	AG6	C	338	349	Right-handed alpha
Helix 61	AG7	C	350	356	Right-handed 310
Helix 62	AG8	C	360	367	Right-handed alpha
Helix 63	AG9	C	369	375	Right-handed alpha

There are 18 sheets in PDB entry 8TRM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	17	22	anti-parallel
Strand 3	A	9	13	anti-parallel
Strand 4	A	104	108	parallel
Strand 5	A	132	137	parallel
Strand 6	A	358	359	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	36	39	anti-parallel
Strand 3	A	66	69	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	76	77	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	161	167	anti-parallel
Strand 3	A	177	179	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	161	167	anti-parallel
Strand 3	A	151	156	anti-parallel
Strand 4	A	298	301	parallel
Strand 5	A	330	331	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	242	first strand
Strand 2	A	248	251	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	17	22	anti-parallel
Strand 3	B	9	13	anti-parallel
Strand 4	B	104	108	parallel
Strand 5	B	132	137	parallel
Strand 6	B	358	359	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	36	39	anti-parallel
Strand 3	B	66	69	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	B	76	77	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	161	167	anti-parallel
Strand 3	B	177	179	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	161	167	anti-parallel
Strand 3	B	151	156	anti-parallel
Strand 4	B	298	301	parallel
Strand 5	B	330	331	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	242	first strand
Strand 2	B	248	251	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	17	22	anti-parallel
Strand 3	C	9	13	anti-parallel
Strand 4	C	104	108	parallel
Strand 5	C	132	137	parallel
Strand 6	C	358	359	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	36	39	anti-parallel
Strand 3	C	66	69	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	73	first strand
Strand 2	C	76	77	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	161	167	anti-parallel
Strand 3	C	177	179	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	161	167	anti-parallel
Strand 3	C	151	156	anti-parallel
Strand 4	C	298	301	parallel
Strand 5	C	330	331	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	242	first strand
Strand 2	C	248	251	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TRM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TRM