Analysis of interatomic Contacts of Structural Units in PDB entry:
8TRU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TRU entry

There is 1 chain in PDB entry 8TRU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 155PRO 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8TRU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
159 163Right-handed 310
Helix 2
AA2
A
191 193Right-handed 310
Helix 3
AA3
A
194 210Right-handed alpha
Helix 4
AA4
A
274 279Right-handed 310
Helix 5
AA5
A
289 293Right-handed 310
Helix 6
AA6
A
301 306Right-handed alpha
Helix 7
AA7
A
311 329Right-handed alpha
Helix 8
AA8
A
330 333Right-handed 310
Helix 9
AA9
A
346 359Right-handed alpha
Helix 10
AB1
A
377 389Right-handed alpha
Helix 11
AB2
A
395 400Right-handed alpha
Helix 12
AB3
A
401 405Right-handed 310
Helix 13
AB4
A
409 420Right-handed 310
Helix 14
AB5
A
424 432Right-handed alpha
Helix 15
AB6
A
448 466Right-handed alpha
Helix 16
AB7
A
468 470Right-handed 310
Helix 17
AB8
A
486 488Right-handed 310
Helix 18
AB9
A
489 501Right-handed alpha
Helix 19
AC1
A
523 528Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8TRU.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 226first strand
Strand 2
A
229 236anti-parallel
Strand 3
A
239 248anti-parallel
Strand 4
A
284 288anti-parallel
Strand 5
A
257 263parallel
Strand 6
A
335 345parallel
Strand 7
A
364 368parallel
Strand 8
A
435 440parallel
Strand 9
A
472 477parallel
Strand 10
A
510 514parallel
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