Analysis of interatomic Contacts of Structural Units in PDB entry:
8TRV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TRV entry

There are 6 chains in PDB entry 8TRV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 27	PRO 329
C	GLU 1	SER 239
G	ASP 1	CYS 232
D	GLU 1	SER 239
E	ASP 1	CYS 232
B	LYS 27	VAL 236

There are 21 helices in PDB entry 8TRV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	38	Right-handed alpha
Helix 2	AA2	C	29	33	Right-handed 310
Helix 3	AA3	C	69	72	Right-handed 310
Helix 4	AA4	C	95	99	Right-handed 310
Helix 5	AA5	C	180	182	Right-handed 310
Helix 6	AA6	C	211	213	Right-handed 310
Helix 7	AA7	C	225	228	Right-handed 310
Helix 8	AA8	G	95	99	Right-handed 310
Helix 9	AA9	G	108	112	Right-handed 310
Helix 10	AB1	G	139	144	Right-handed alpha
Helix 11	AB2	G	201	206	Right-handed alpha
Helix 12	AB3	D	69	72	Right-handed 310
Helix 13	AB4	D	95	99	Right-handed 310
Helix 14	AB5	D	180	182	Right-handed 310
Helix 15	AB6	D	211	213	Right-handed 310
Helix 16	AB7	D	225	228	Right-handed 310
Helix 17	AB8	E	95	99	Right-handed 310
Helix 18	AB9	E	108	112	Right-handed 310
Helix 19	AC1	E	139	144	Right-handed alpha
Helix 20	AC2	E	201	206	Right-handed alpha
Helix 21	AC3	B	34	38	Right-handed alpha

There are 38 sheets in PDB entry 8TRV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	33	first strand
Strand 2	A	190	201	anti-parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	164	170	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	33	first strand
Strand 2	A	190	201	anti-parallel
Strand 3	A	214	215	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	65	68	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	82	first strand
Strand 2	A	177	184	anti-parallel
Strand 3	A	86	87	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	82	first strand
Strand 2	A	177	184	anti-parallel
Strand 3	A	120	124	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	209	211	anti-parallel
Strand 3	A	229	230	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	227	first strand
Strand 2	A	244	248	anti-parallel
Strand 3	A	253	257	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	261	262	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	269	first strand
Strand 2	A	272	275	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	291	292	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	19	26	anti-parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	76	81	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	131	135	parallel
Strand 3	C	100	106	anti-parallel
Strand 4	C	35	44	anti-parallel
Strand 5	C	50	57	anti-parallel
Strand 6	C	62	67	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	159	169	anti-parallel
Strand 3	C	200	209	anti-parallel
Strand 4	C	187	189	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	159	169	anti-parallel
Strand 3	C	200	209	anti-parallel
Strand 4	C	193	194	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	178	first strand
Strand 2	C	218	224	anti-parallel
Strand 3	C	229	235	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	86	91	anti-parallel
Strand 4	G	76	83	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	120	124	parallel
Strand 3	G	101	106	anti-parallel
Strand 4	G	39	44	anti-parallel
Strand 5	G	51	55	anti-parallel
Strand 6	G	66	67	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	120	124	parallel
Strand 3	G	101	106	anti-parallel
Strand 4	G	115	116	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	136	first strand
Strand 2	G	147	157	anti-parallel
Strand 3	G	191	200	anti-parallel
Strand 4	G	177	181	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	173	first strand
Strand 2	G	163	168	anti-parallel
Strand 3	G	209	216	anti-parallel
Strand 4	G	219	228	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	19	26	anti-parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	76	81	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	131	135	parallel
Strand 3	D	100	106	anti-parallel
Strand 4	D	34	44	anti-parallel
Strand 5	D	50	57	anti-parallel
Strand 6	D	62	67	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	148	first strand
Strand 2	D	159	169	anti-parallel
Strand 3	D	200	209	anti-parallel
Strand 4	D	187	189	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	148	first strand
Strand 2	D	159	169	anti-parallel
Strand 3	D	200	209	anti-parallel
Strand 4	D	193	194	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	178	first strand
Strand 2	D	219	224	anti-parallel
Strand 3	D	229	234	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	86	91	anti-parallel
Strand 4	E	76	83	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	120	124	parallel
Strand 3	E	101	106	anti-parallel
Strand 4	E	39	44	anti-parallel
Strand 5	E	51	55	anti-parallel
Strand 6	E	66	67	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	120	124	parallel
Strand 3	E	101	106	anti-parallel
Strand 4	E	115	116	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	136	first strand
Strand 2	E	147	157	anti-parallel
Strand 3	E	191	200	anti-parallel
Strand 4	E	177	181	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	173	first strand
Strand 2	E	163	168	anti-parallel
Strand 3	E	209	216	anti-parallel
Strand 4	E	219	228	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	33	first strand
Strand 2	B	189	201	anti-parallel
Strand 3	B	94	102	anti-parallel
Strand 4	B	164	169	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	65	69	anti-parallel
Strand 3	B	189	201	anti-parallel
Strand 4	B	214	215	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	79	82	anti-parallel
Strand 3	B	179	184	anti-parallel
Strand 4	B	119	124	anti-parallel
Strand 5	B	143	145	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	206	first strand
Strand 2	B	209	211	anti-parallel
Strand 3	B	229	230	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	227	first strand
Strand 2	B	244	248	anti-parallel
Strand 3	B	252	257	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	235	first strand
Strand 2	B	261	262	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	269	first strand
Strand 2	B	272	275	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	291	292	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TRV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TRV