Analysis of interatomic Contacts of Structural Units in PDB entry:
8TRX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TRX entry

There are 2 chains in PDB entry 8TRX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 22SER 408
B
 VAL 23SER 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8TRX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 47Right-handed 310
Helix 2
AA2
A
68 87Right-handed alpha
Helix 3
AA3
A
147 152Right-handed 310
Helix 4
AA4
A
160 164Right-handed 310
Helix 5
AA5
A
177 183Right-handed alpha
Helix 6
AA6
A
184 187Right-handed 310
Helix 7
AA7
A
190 209Right-handed alpha
Helix 8
AA8
A
209 214Right-handed alpha
Helix 9
AA9
A
226 238Right-handed alpha
Helix 10
AB1
A
257 264Right-handed alpha
Helix 11
AB2
A
279 287Right-handed alpha
Helix 12
AB3
A
289 293Right-handed 310
Helix 13
AB4
A
296 303Right-handed alpha
Helix 14
AB5
A
317 320Right-handed 310
Helix 15
AB6
A
321 339Right-handed alpha
Helix 16
AB7
A
341 343Right-handed 310
Helix 17
AB8
A
359 374Right-handed alpha
Helix 18
AB9
A
393 398Right-handed alpha
Helix 19
AC1
B
68 87Right-handed alpha
Helix 20
AC2
B
147 152Right-handed 310
Helix 21
AC3
B
160 164Right-handed 310
Helix 22
AC4
B
177 183Right-handed alpha
Helix 23
AC5
B
184 187Right-handed 310
Helix 24
AC6
B
190 209Right-handed alpha
Helix 25
AC7
B
209 214Right-handed alpha
Helix 26
AC8
B
226 239Right-handed alpha
Helix 27
AC9
B
257 264Right-handed alpha
Helix 28
AD1
B
279 287Right-handed alpha
Helix 29
AD2
B
289 293Right-handed 310
Helix 30
AD3
B
296 303Right-handed alpha
Helix 31
AD4
B
317 320Right-handed 310
Helix 32
AD5
B
321 337Right-handed alpha
Helix 33
AD6
B
338 340Right-handed 310
Helix 34
AD7
B
341 343Right-handed 310
Helix 35
AD8
B
359 374Right-handed alpha
Helix 36
AD9
B
392 397Right-handed alpha
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There are 4 sheets in PDB entry 8TRX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 103first strand
Strand 2
A
106 113anti-parallel
Strand 3
A
116 123anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 159first strand
Strand 2
A
133 139parallel
Strand 3
A
215 225parallel
Strand 4
A
244 248parallel
Strand 5
A
308 313parallel
Strand 6
A
345 349parallel
Strand 7
A
385 387parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 103first strand
Strand 2
B
106 113anti-parallel
Strand 3
B
116 123anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 159first strand
Strand 2
B
133 139parallel
Strand 3
B
215 225parallel
Strand 4
B
244 248parallel
Strand 5
B
308 312parallel
Strand 6
B
345 349parallel
Strand 7
B
385 387parallel
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