Analysis of interatomic Contacts of Structural Units in PDB entry:
8TS2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TS2 entry

There are 5 chains in PDB entry 8TS2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 82	GLN 399
B	VAL 82	GLN 399
C	VAL 82	GLN 399
D	VAL 82	GLN 399
E	VAL 82	GLN 399

There are 45 helices in PDB entry 8TS2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	111	Right-handed alpha
Helix 2	AA2	A	159	165	Right-handed alpha
Helix 3	AA3	A	166	172	Right-handed alpha
Helix 4	AA4	A	183	220	Right-handed alpha
Helix 5	AA5	A	228	261	Right-handed alpha
Helix 6	AA6	A	261	269	Right-handed alpha
Helix 7	AA7	A	269	275	Right-handed alpha
Helix 8	AA8	A	287	360	Right-handed alpha
Helix 9	AA9	A	370	399	Right-handed alpha
Helix 10	AB1	B	104	111	Right-handed alpha
Helix 11	AB2	B	159	165	Right-handed alpha
Helix 12	AB3	B	166	172	Right-handed alpha
Helix 13	AB4	B	183	220	Right-handed alpha
Helix 14	AB5	B	228	261	Right-handed alpha
Helix 15	AB6	B	261	269	Right-handed alpha
Helix 16	AB7	B	269	275	Right-handed alpha
Helix 17	AB8	B	287	360	Right-handed alpha
Helix 18	AB9	B	370	399	Right-handed alpha
Helix 19	AC1	C	104	111	Right-handed alpha
Helix 20	AC2	C	159	165	Right-handed alpha
Helix 21	AC3	C	166	172	Right-handed alpha
Helix 22	AC4	C	183	220	Right-handed alpha
Helix 23	AC5	C	228	261	Right-handed alpha
Helix 24	AC6	C	261	269	Right-handed alpha
Helix 25	AC7	C	269	275	Right-handed alpha
Helix 26	AC8	C	287	360	Right-handed alpha
Helix 27	AC9	C	370	399	Right-handed alpha
Helix 28	AD1	D	104	111	Right-handed alpha
Helix 29	AD2	D	159	165	Right-handed alpha
Helix 30	AD3	D	166	172	Right-handed alpha
Helix 31	AD4	D	183	220	Right-handed alpha
Helix 32	AD5	D	228	261	Right-handed alpha
Helix 33	AD6	D	261	269	Right-handed alpha
Helix 34	AD7	D	269	275	Right-handed alpha
Helix 35	AD8	D	287	360	Right-handed alpha
Helix 36	AD9	D	370	399	Right-handed alpha
Helix 37	AE1	E	104	111	Right-handed alpha
Helix 38	AE2	E	159	165	Right-handed alpha
Helix 39	AE3	E	166	172	Right-handed alpha
Helix 40	AE4	E	183	220	Right-handed alpha
Helix 41	AE5	E	228	261	Right-handed alpha
Helix 42	AE6	E	261	269	Right-handed alpha
Helix 43	AE7	E	269	275	Right-handed alpha
Helix 44	AE8	E	287	360	Right-handed alpha
Helix 45	AE9	E	370	399	Right-handed alpha

There are 5 sheets in PDB entry 8TS2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	103	first strand
Strand 2	A	85	92	anti-parallel
Strand 3	A	148	152	anti-parallel
Strand 4	A	141	144	anti-parallel
Strand 5	A	132	136	anti-parallel
Strand 6	A	125	129	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	103	first strand
Strand 2	B	85	92	anti-parallel
Strand 3	B	148	152	anti-parallel
Strand 4	B	141	144	anti-parallel
Strand 5	B	132	136	anti-parallel
Strand 6	B	125	129	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	103	first strand
Strand 2	C	85	92	anti-parallel
Strand 3	C	148	152	anti-parallel
Strand 4	C	141	144	anti-parallel
Strand 5	C	132	136	anti-parallel
Strand 6	C	125	129	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	103	first strand
Strand 2	D	85	92	anti-parallel
Strand 3	D	148	152	anti-parallel
Strand 4	D	141	144	anti-parallel
Strand 5	D	132	136	anti-parallel
Strand 6	D	125	129	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	103	first strand
Strand 2	E	85	92	anti-parallel
Strand 3	E	148	152	anti-parallel
Strand 4	E	141	144	anti-parallel
Strand 5	E	132	136	anti-parallel
Strand 6	E	125	129	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TS2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TS2