Analysis of interatomic Contacts of Structural Units in PDB entry:
8TS5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TS5 entry

There are 4 chains in PDB entry 8TS5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	LYS 238
G	ASP 1	CYS 232
B	GLU 1	LYS 238
C	ASP 1	CYS 232

There are 17 helices in PDB entry 8TS5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	33	Right-handed 310
Helix 2	AA2	A	82	84	Right-handed 310
Helix 3	AA3	A	95	99	Right-handed 310
Helix 4	AA4	A	180	182	Right-handed 310
Helix 5	AA5	A	211	215	Right-handed 310
Helix 6	AA6	A	225	228	Right-handed 310
Helix 7	AA7	G	95	99	Right-handed 310
Helix 8	AA8	G	139	144	Right-handed alpha
Helix 9	AA9	G	201	206	Right-handed alpha
Helix 10	AB1	B	29	33	Right-handed 310
Helix 11	AB2	B	95	99	Right-handed 310
Helix 12	AB3	B	180	182	Right-handed 310
Helix 13	AB4	B	209	213	Right-handed 310
Helix 14	AB5	B	225	228	Right-handed 310
Helix 15	AB6	C	95	99	Right-handed 310
Helix 16	AB7	C	139	144	Right-handed alpha
Helix 17	AB8	C	201	206	Right-handed alpha

There are 22 sheets in PDB entry 8TS5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	19	26	anti-parallel
Strand 3	A	86	91	anti-parallel
Strand 4	A	76	81	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	131	135	parallel
Strand 3	A	100	106	anti-parallel
Strand 4	A	35	44	anti-parallel
Strand 5	A	51	56	anti-parallel
Strand 6	A	63	67	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	131	135	parallel
Strand 3	A	100	106	anti-parallel
Strand 4	A	126	127	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	159	169	anti-parallel
Strand 3	A	200	209	anti-parallel
Strand 4	A	187	189	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	159	169	anti-parallel
Strand 3	A	200	209	anti-parallel
Strand 4	A	193	194	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	178	first strand
Strand 2	A	219	224	anti-parallel
Strand 3	A	229	234	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	86	91	anti-parallel
Strand 4	G	76	83	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	120	124	parallel
Strand 3	G	101	106	anti-parallel
Strand 4	G	39	44	anti-parallel
Strand 5	G	51	55	anti-parallel
Strand 6	G	66	67	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	120	124	parallel
Strand 3	G	101	106	anti-parallel
Strand 4	G	115	116	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	136	first strand
Strand 2	G	147	157	anti-parallel
Strand 3	G	191	200	anti-parallel
Strand 4	G	177	181	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	172	first strand
Strand 2	G	163	168	anti-parallel
Strand 3	G	209	216	anti-parallel
Strand 4	G	219	228	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	19	26	anti-parallel
Strand 3	B	86	91	anti-parallel
Strand 4	B	76	81	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	131	135	parallel
Strand 3	B	100	106	anti-parallel
Strand 4	B	35	44	anti-parallel
Strand 5	B	50	56	anti-parallel
Strand 6	B	63	67	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	131	135	parallel
Strand 3	B	100	106	anti-parallel
Strand 4	B	126	127	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	160	169	anti-parallel
Strand 3	B	200	208	anti-parallel
Strand 4	B	187	189	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	160	169	anti-parallel
Strand 3	B	200	208	anti-parallel
Strand 4	B	193	194	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	178	first strand
Strand 2	B	218	224	anti-parallel
Strand 3	B	229	235	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	76	83	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	120	125	parallel
Strand 3	C	100	106	anti-parallel
Strand 4	C	39	44	anti-parallel
Strand 5	C	51	55	anti-parallel
Strand 6	C	66	67	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	120	125	parallel
Strand 3	C	100	106	anti-parallel
Strand 4	C	115	116	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	147	157	anti-parallel
Strand 3	C	191	200	anti-parallel
Strand 4	C	177	181	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	C	163	168	anti-parallel
Strand 3	C	209	216	anti-parallel
Strand 4	C	219	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TS5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TS5