Analysis of interatomic Contacts of Structural Units in PDB entry:
8TSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TSD entry

There is 1 chain in PDB entry 8TSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5LEU 648
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 8TSD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 53Right-handed alpha
Helix 2
AA2
A
54 56Right-handed 310
Helix 3
AA3
A
58 62Right-handed 310
Helix 4
AA4
A
64 68Right-handed 310
Helix 5
AA5
A
88 92Right-handed 310
Helix 6
AA6
A
107 122Right-handed alpha
Helix 7
AA7
A
125 130Right-handed alpha
Helix 8
AA8
A
133 143Right-handed alpha
Helix 9
AA9
A
143 155Right-handed alpha
Helix 10
AB1
A
159 167Right-handed alpha
Helix 11
AB2
A
178 183Right-handed alpha
Helix 12
AB3
A
184 187Right-handed 310
Helix 13
AB4
A
216 229Right-handed alpha
Helix 14
AB5
A
230 233Right-handed 310
Helix 15
AB6
A
235 249Right-handed alpha
Helix 16
AB7
A
266 269Right-handed 310
Helix 17
AB8
A
270 279Right-handed alpha
Helix 18
AB9
A
290 296Right-handed alpha
Helix 19
AC1
A
305 309Right-handed 310
Helix 20
AC2
A
328 330Right-handed 310
Helix 21
AC3
A
394 396Right-handed 310
Helix 22
AC4
A
488 501Right-handed alpha
Helix 23
AC5
A
525 536Right-handed alpha
Helix 24
AC6
A
544 554Right-handed alpha
Helix 25
AC7
A
556 563Right-handed 310
Helix 26
AC8
A
564 572Right-handed alpha
Helix 27
AC9
A
576 589Right-handed alpha
Helix 28
AD1
A
594 599Right-handed alpha
Helix 29
AD2
A
600 603Right-handed 310
Helix 30
AD3
A
608 623Right-handed alpha
Helix 31
AD4
A
624 631Right-handed alpha
Helix 32
AD5
A
631 642Right-handed alpha
Helix 33
AD6
A
647 660Right-handed alpha
Helix 34
AD7
A
660 673Right-handed alpha
Helix 35
AD8
A
680 693Right-handed alpha
Helix 36
AD9
A
697 722Right-handed alpha
Helix 37
AE1
A
727 741Right-handed alpha
Helix 38
AE2
A
741 749Right-handed alpha
Helix 39
AE3
A
789 793Right-handed 310
Helix 40
AE4
A
807 828Right-handed alpha
Helix 41
AE5
A
857 863Right-handed alpha
Helix 42
AE6
A
875 884Right-handed alpha
Helix 43
AE7
A
886 888Right-handed 310
Helix 44
AE8
A
889 911Right-handed alpha
Helix 45
AE9
A
933 942Right-handed alpha
Helix 46
AF1
A
957 965Right-handed alpha
Helix 47
AF2
A
970 973Right-handed 310
Helix 48
AF3
A
974 993Right-handed alpha
Helix 49
AF4
A
994 1004Right-handed alpha
Helix 50
AF5
A
1005 1009Right-handed 310
Helix 51
AF6
A
1015 1026Right-handed alpha
Helix 52
AF7
A
1031 1048Right-handed alpha
Helix 53
AF8
B
339 345Right-handed alpha
Helix 54
AF9
B
400 411Right-handed alpha
Helix 55
AG1
B
412 416Right-handed 310
Helix 56
AG2
B
442 447Right-handed alpha
Helix 57
AG3
B
447 516Right-handed alpha
Helix 58
AG4
B
517 580Right-handed alpha
Helix 59
AG5
B
581 586Right-handed alpha
Helix 60
AG6
B
590 595Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 8TSD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
79 82anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 212first strand
Strand 2
A
189 198anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
260 261anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
483 485parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 340anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
376 377anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
401 410anti-parallel
Strand 4
A
418 428anti-parallel
Strand 5
A
446 447anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 753first strand
Strand 2
A
756 761anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
866 868first strand
Strand 2
A
871 872anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 359first strand
Strand 2
B
368 374anti-parallel
Strand 3
B
377 386anti-parallel
Strand 4
B
389 391anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il