Analysis of interatomic Contacts of Structural Units in PDB entry:
8TSH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TSH entry

There are 12 chains in PDB entry 8TSH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 217
B	MET 1	GLY 217
C	VAL 12	VAL 270
D	ARG 14	ALA 268
E	THR 10	ASP 368
F	LYS 4	ASP 371
G	LEU 5	ASP 371
H	ALA 11	HIS 369
I	THR 10	THR 365
J	LEU 9	ASP 371
K	ARG 13	ASP 371
L	THR 10	ARG 367

There are117 helices in PDB entry 8TSH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	52	Right-handed alpha
Helix 2	AA2	A	83	95	Right-handed alpha
Helix 3	AA3	A	98	113	Right-handed alpha
Helix 4	AA4	A	116	121	Right-handed 310
Helix 5	AA5	A	122	126	Right-handed 310
Helix 6	AA6	A	129	142	Right-handed alpha
Helix 7	AA7	A	152	156	Right-handed 310
Helix 8	AA8	A	157	171	Right-handed alpha
Helix 9	AA9	A	183	191	Right-handed alpha
Helix 10	AB1	A	207	217	Right-handed alpha
Helix 11	AB2	B	45	52	Right-handed alpha
Helix 12	AB3	B	83	95	Right-handed alpha
Helix 13	AB4	B	98	113	Right-handed alpha
Helix 14	AB5	B	116	121	Right-handed 310
Helix 15	AB6	B	122	126	Right-handed 310
Helix 16	AB7	B	127	141	Right-handed alpha
Helix 17	AB8	B	157	171	Right-handed alpha
Helix 18	AB9	B	184	191	Right-handed alpha
Helix 19	AC1	B	207	217	Right-handed alpha
Helix 20	AC2	C	15	36	Right-handed alpha
Helix 21	AC3	C	42	69	Right-handed alpha
Helix 22	AC4	C	73	102	Right-handed alpha
Helix 23	AC5	C	112	142	Right-handed alpha
Helix 24	AC6	C	150	177	Right-handed alpha
Helix 25	AC7	C	178	180	Right-handed 310
Helix 26	AC8	C	181	188	Right-handed alpha
Helix 27	AC9	C	189	197	Right-handed alpha
Helix 28	AD1	C	202	206	Right-handed 310
Helix 29	AD2	C	207	209	Right-handed 310
Helix 30	AD3	C	210	215	Right-handed alpha
Helix 31	AD4	C	217	229	Right-handed alpha
Helix 32	AD5	C	242	263	Right-handed alpha
Helix 33	AD6	C	265	269	Right-handed 310
Helix 34	AD7	D	15	37	Right-handed alpha
Helix 35	AD8	D	42	47	Right-handed alpha
Helix 36	AD9	D	47	59	Right-handed alpha
Helix 37	AE1	D	61	69	Right-handed alpha
Helix 38	AE2	D	73	97	Right-handed alpha
Helix 39	AE3	D	102	106	Right-handed 310
Helix 40	AE4	D	112	142	Right-handed alpha
Helix 41	AE5	D	150	176	Right-handed alpha
Helix 42	AE6	D	180	197	Right-handed alpha
Helix 43	AE7	D	202	206	Right-handed 310
Helix 44	AE8	D	210	215	Right-handed alpha
Helix 45	AE9	D	217	231	Right-handed alpha
Helix 46	AF1	D	242	263	Right-handed alpha
Helix 47	AF2	D	263	268	Right-handed alpha
Helix 48	AF3	E	11	33	Right-handed alpha
Helix 49	AF4	E	72	84	Right-handed alpha
Helix 50	AF5	E	86	97	Right-handed alpha
Helix 51	AF6	E	97	103	Right-handed alpha
Helix 52	AF7	E	118	129	Right-handed alpha
Helix 53	AF8	E	149	204	Right-handed alpha
Helix 54	AF9	E	290	317	Right-handed alpha
Helix 55	AG1	E	340	368	Right-handed alpha
Helix 56	AG2	F	4	8	Right-handed 310
Helix 57	AG3	F	13	19	Right-handed alpha
Helix 58	AG4	F	19	33	Right-handed alpha
Helix 59	AG5	F	73	84	Right-handed alpha
Helix 60	AG6	F	85	97	Right-handed alpha
Helix 61	AG7	F	97	103	Right-handed alpha
Helix 62	AG8	F	118	130	Right-handed alpha
Helix 63	AG9	F	149	204	Right-handed alpha
Helix 64	AH1	F	290	317	Right-handed alpha
Helix 65	AH2	F	340	370	Right-handed alpha
Helix 66	AH3	G	5	9	Right-handed 310
Helix 67	AH4	G	10	19	Right-handed alpha
Helix 68	AH5	G	19	33	Right-handed alpha
Helix 69	AH6	G	72	84	Right-handed alpha
Helix 70	AH7	G	85	97	Right-handed alpha
Helix 71	AH8	G	97	103	Right-handed alpha
Helix 72	AH9	G	118	129	Right-handed alpha
Helix 73	AI1	G	149	203	Right-handed alpha
Helix 74	AI2	G	290	319	Right-handed alpha
Helix 75	AI3	G	340	368	Right-handed alpha
Helix 76	AI4	H	12	31	Right-handed alpha
Helix 77	AI5	H	72	83	Right-handed alpha
Helix 78	AI6	H	85	97	Right-handed alpha
Helix 79	AI7	H	97	103	Right-handed alpha
Helix 80	AI8	H	118	129	Right-handed alpha
Helix 81	AI9	H	149	204	Right-handed alpha
Helix 82	AJ1	H	291	317	Right-handed alpha
Helix 83	AJ2	H	340	369	Right-handed alpha
Helix 84	AJ3	I	11	33	Right-handed alpha
Helix 85	AJ4	I	73	84	Right-handed alpha
Helix 86	AJ5	I	85	97	Right-handed alpha
Helix 87	AJ6	I	97	103	Right-handed alpha
Helix 88	AJ7	I	118	129	Right-handed alpha
Helix 89	AJ8	I	149	202	Right-handed alpha
Helix 90	AJ9	I	292	319	Right-handed alpha
Helix 91	AK1	I	340	365	Right-handed alpha
Helix 92	AK2	J	11	19	Right-handed alpha
Helix 93	AK3	J	20	32	Right-handed alpha
Helix 94	AK4	J	71	84	Right-handed alpha
Helix 95	AK5	J	85	97	Right-handed alpha
Helix 96	AK6	J	97	103	Right-handed alpha
Helix 97	AK7	J	118	129	Right-handed alpha
Helix 98	AK8	J	149	204	Right-handed alpha
Helix 99	AK9	J	290	317	Right-handed alpha
Helix 100	AL1	J	340	370	Right-handed alpha
Helix 101	AL2	K	20	33	Right-handed alpha
Helix 102	AL3	K	72	84	Right-handed alpha
Helix 103	AL4	K	85	97	Right-handed alpha
Helix 104	AL5	K	97	103	Right-handed alpha
Helix 105	AL6	K	118	129	Right-handed alpha
Helix 106	AL7	K	149	202	Right-handed alpha
Helix 107	AL8	K	292	317	Right-handed alpha
Helix 108	AL9	K	340	368	Right-handed alpha
Helix 109	AM1	L	11	17	Right-handed alpha
Helix 110	AM2	L	19	33	Right-handed alpha
Helix 111	AM3	L	72	84	Right-handed alpha
Helix 112	AM4	L	85	97	Right-handed alpha
Helix 113	AM5	L	97	103	Right-handed alpha
Helix 114	AM6	L	118	129	Right-handed alpha
Helix 115	AM7	L	149	204	Right-handed alpha
Helix 116	AM8	L	291	317	Right-handed alpha
Helix 117	AM9	L	340	366	Right-handed alpha

There are 14 sheets in PDB entry 8TSH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	61	63	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	12	first strand
Strand 2	A	17	24	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	176	180	parallel
Strand 3	A	34	36	parallel
Strand 4	A	193	198	parallel
Strand 5	A	201	205	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	62	63	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	13	first strand
Strand 2	B	16	24	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	B	146	150	parallel
Strand 3	B	176	180	parallel
Strand 4	B	34	38	parallel
Strand 5	B	193	197	parallel
Strand 6	B	202	205	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	135	first strand
Strand 2	E	140	147	anti-parallel
Strand 3	E	38	48	anti-parallel
Strand 4	E	322	328	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	135	first strand
Strand 2	F	140	147	anti-parallel
Strand 3	F	38	48	anti-parallel
Strand 4	F	322	328	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	135	first strand
Strand 2	G	140	147	anti-parallel
Strand 3	G	38	48	anti-parallel
Strand 4	G	322	328	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	135	first strand
Strand 2	H	140	147	anti-parallel
Strand 3	H	38	48	anti-parallel
Strand 4	H	322	328	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	130	135	first strand
Strand 2	I	140	147	anti-parallel
Strand 3	I	38	48	anti-parallel
Strand 4	I	322	328	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	130	135	first strand
Strand 2	J	140	147	anti-parallel
Strand 3	J	38	48	anti-parallel
Strand 4	J	322	328	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	130	135	first strand
Strand 2	K	140	147	anti-parallel
Strand 3	K	38	48	anti-parallel
Strand 4	K	322	328	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	130	135	first strand
Strand 2	L	140	147	anti-parallel
Strand 3	L	38	48	anti-parallel
Strand 4	L	322	328	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TSH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TSH