Analysis of interatomic Contacts of Structural Units in PDB entry:
8TSI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TSI entry

There are 12 chains in PDB entry 8TSI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 2	GLY 217
C	LYS 13	SER 269
E	LYS 12	LEU 361
F	SER 7	GLN 370
G	ALA 11	ASP 371
H	THR 10	ILE 366
I	LYS 12	LEU 361
J	SER 7	GLN 370
K	ALA 11	ASP 371
L	THR 10	ILE 366
D	LYS 13	SER 269
B	ILE 2	GLY 217

There are115 helices in PDB entry 8TSI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	53	Right-handed alpha
Helix 2	AA2	A	83	94	Right-handed alpha
Helix 3	AA3	A	98	113	Right-handed alpha
Helix 4	AA4	A	116	121	Right-handed 310
Helix 5	AA5	A	122	126	Right-handed 310
Helix 6	AA6	A	127	140	Right-handed alpha
Helix 7	AA7	A	157	171	Right-handed alpha
Helix 8	AA8	A	183	191	Right-handed alpha
Helix 9	AA9	A	207	217	Right-handed alpha
Helix 10	AB1	C	15	36	Right-handed alpha
Helix 11	AB2	C	40	69	Right-handed alpha
Helix 12	AB3	C	73	94	Right-handed alpha
Helix 13	AB4	C	96	101	Right-handed alpha
Helix 14	AB5	C	102	106	Right-handed 310
Helix 15	AB6	C	112	143	Right-handed alpha
Helix 16	AB7	C	150	176	Right-handed alpha
Helix 17	AB8	C	177	178	Right-handed 310
Helix 18	AB9	C	179	180	Right-handed 310
Helix 19	AC1	C	181	190	Right-handed alpha
Helix 20	AC2	C	190	197	Right-handed alpha
Helix 21	AC3	C	202	206	Right-handed 310
Helix 22	AC4	C	207	209	Right-handed 310
Helix 23	AC5	C	210	216	Right-handed alpha
Helix 24	AC6	C	217	231	Right-handed alpha
Helix 25	AC7	C	242	263	Right-handed alpha
Helix 26	AC8	E	13	19	Right-handed alpha
Helix 27	AC9	E	19	31	Right-handed alpha
Helix 28	AD1	E	74	84	Right-handed alpha
Helix 29	AD2	E	86	97	Right-handed alpha
Helix 30	AD3	E	97	102	Right-handed alpha
Helix 31	AD4	E	118	130	Right-handed alpha
Helix 32	AD5	E	149	180	Right-handed alpha
Helix 33	AD6	E	340	361	Right-handed alpha
Helix 34	AD7	F	12	19	Right-handed alpha
Helix 35	AD8	F	19	32	Right-handed alpha
Helix 36	AD9	F	73	84	Right-handed alpha
Helix 37	AE1	F	85	97	Right-handed alpha
Helix 38	AE2	F	97	103	Right-handed alpha
Helix 39	AE3	F	118	130	Right-handed alpha
Helix 40	AE4	F	149	175	Right-handed alpha
Helix 41	AE5	F	340	370	Right-handed alpha
Helix 42	AE6	G	13	18	Right-handed alpha
Helix 43	AE7	G	19	32	Right-handed alpha
Helix 44	AE8	G	72	84	Right-handed alpha
Helix 45	AE9	G	86	97	Right-handed alpha
Helix 46	AF1	G	97	102	Right-handed alpha
Helix 47	AF2	G	118	130	Right-handed alpha
Helix 48	AF3	G	149	175	Right-handed alpha
Helix 49	AF4	G	340	369	Right-handed alpha
Helix 50	AF5	H	11	19	Right-handed alpha
Helix 51	AF6	H	19	33	Right-handed alpha
Helix 52	AF7	H	72	84	Right-handed alpha
Helix 53	AF8	H	85	97	Right-handed alpha
Helix 54	AF9	H	97	103	Right-handed alpha
Helix 55	AG1	H	118	129	Right-handed alpha
Helix 56	AG2	H	149	178	Right-handed alpha
Helix 57	AG3	H	340	366	Right-handed alpha
Helix 58	AG4	I	13	19	Right-handed alpha
Helix 59	AG5	I	19	31	Right-handed alpha
Helix 60	AG6	I	74	84	Right-handed alpha
Helix 61	AG7	I	86	97	Right-handed alpha
Helix 62	AG8	I	97	102	Right-handed alpha
Helix 63	AG9	I	118	130	Right-handed alpha
Helix 64	AH1	I	149	180	Right-handed alpha
Helix 65	AH2	I	340	361	Right-handed alpha
Helix 66	AH3	J	7	11	Right-handed 310
Helix 67	AH4	J	12	19	Right-handed alpha
Helix 68	AH5	J	19	33	Right-handed alpha
Helix 69	AH6	J	73	84	Right-handed alpha
Helix 70	AH7	J	85	97	Right-handed alpha
Helix 71	AH8	J	97	103	Right-handed alpha
Helix 72	AH9	J	118	130	Right-handed alpha
Helix 73	AI1	J	149	175	Right-handed alpha
Helix 74	AI2	J	340	370	Right-handed alpha
Helix 75	AI3	K	13	18	Right-handed alpha
Helix 76	AI4	K	19	32	Right-handed alpha
Helix 77	AI5	K	72	84	Right-handed alpha
Helix 78	AI6	K	86	97	Right-handed alpha
Helix 79	AI7	K	97	102	Right-handed alpha
Helix 80	AI8	K	118	130	Right-handed alpha
Helix 81	AI9	K	149	175	Right-handed alpha
Helix 82	AJ1	K	340	369	Right-handed alpha
Helix 83	AJ2	L	11	19	Right-handed alpha
Helix 84	AJ3	L	19	33	Right-handed alpha
Helix 85	AJ4	L	72	84	Right-handed alpha
Helix 86	AJ5	L	85	97	Right-handed alpha
Helix 87	AJ6	L	97	103	Right-handed alpha
Helix 88	AJ7	L	118	129	Right-handed alpha
Helix 89	AJ8	L	149	178	Right-handed alpha
Helix 90	AJ9	L	340	366	Right-handed alpha
Helix 91	AK1	D	15	36	Right-handed alpha
Helix 92	AK2	D	40	69	Right-handed alpha
Helix 93	AK3	D	73	94	Right-handed alpha
Helix 94	AK4	D	96	101	Right-handed alpha
Helix 95	AK5	D	102	106	Right-handed 310
Helix 96	AK6	D	112	143	Right-handed alpha
Helix 97	AK7	D	150	176	Right-handed alpha
Helix 98	AK8	D	177	178	Right-handed 310
Helix 99	AK9	D	179	180	Right-handed 310
Helix 100	AL1	D	181	190	Right-handed alpha
Helix 101	AL2	D	190	197	Right-handed alpha
Helix 102	AL3	D	202	206	Right-handed 310
Helix 103	AL4	D	207	209	Right-handed 310
Helix 104	AL5	D	210	216	Right-handed alpha
Helix 105	AL6	D	217	231	Right-handed alpha
Helix 106	AL7	D	242	263	Right-handed alpha
Helix 107	AL8	B	43	53	Right-handed alpha
Helix 108	AL9	B	83	94	Right-handed alpha
Helix 109	AM1	B	98	113	Right-handed alpha
Helix 110	AM2	B	116	121	Right-handed 310
Helix 111	AM3	B	122	126	Right-handed 310
Helix 112	AM4	B	127	140	Right-handed alpha
Helix 113	AM5	B	157	171	Right-handed alpha
Helix 114	AM6	B	183	191	Right-handed alpha
Helix 115	AM7	B	207	217	Right-handed alpha

There are 12 sheets in PDB entry 8TSI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	11	first strand
Strand 2	A	18	22	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	176	180	parallel
Strand 3	A	34	36	parallel
Strand 4	A	193	198	parallel
Strand 5	A	201	205	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	135	first strand
Strand 2	E	140	147	anti-parallel
Strand 3	E	38	47	anti-parallel
Strand 4	E	323	328	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	134	first strand
Strand 2	F	141	147	anti-parallel
Strand 3	F	38	47	anti-parallel
Strand 4	F	323	328	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	135	first strand
Strand 2	G	140	147	anti-parallel
Strand 3	G	38	46	anti-parallel
Strand 4	G	324	328	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	141	147	anti-parallel
Strand 3	H	38	47	anti-parallel
Strand 4	H	323	328	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	131	135	first strand
Strand 2	I	140	147	anti-parallel
Strand 3	I	38	47	anti-parallel
Strand 4	I	323	328	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	131	134	first strand
Strand 2	J	141	147	anti-parallel
Strand 3	J	38	47	anti-parallel
Strand 4	J	323	328	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	131	135	first strand
Strand 2	K	140	147	anti-parallel
Strand 3	K	38	46	anti-parallel
Strand 4	K	324	328	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	130	134	first strand
Strand 2	L	141	147	anti-parallel
Strand 3	L	38	47	anti-parallel
Strand 4	L	323	328	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	11	first strand
Strand 2	B	18	22	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	176	180	parallel
Strand 3	B	34	36	parallel
Strand 4	B	193	198	parallel
Strand 5	B	201	205	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TSI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TSI