Analysis of interatomic Contacts of Structural Units in PDB entry:
8TSO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TSO entry

There are 2 chains in PDB entry 8TSO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7GLN 579
B
 LEU 7GLN 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 8TSO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed alpha
Helix 2
AA2
A
18 22Right-handed 310
Helix 3
AA3
A
23 54Right-handed alpha
Helix 4
AA4
A
60 110Right-handed alpha
Helix 5
AA5
A
112 117Right-handed 310
Helix 6
AA6
A
120 130Right-handed alpha
Helix 7
AA7
A
132 137Right-handed 310
Helix 8
AA8
A
140 164Right-handed alpha
Helix 9
AA9
A
168 213Right-handed alpha
Helix 10
AB1
A
213 220Right-handed alpha
Helix 11
AB2
A
222 271Right-handed alpha
Helix 12
AB3
A
273 278Right-handed alpha
Helix 13
AB4
A
282 323Right-handed alpha
Helix 14
AB5
A
381 390Right-handed alpha
Helix 15
AB6
A
411 417Right-handed alpha
Helix 16
AB7
A
433 438Right-handed alpha
Helix 17
AB8
A
446 457Right-handed alpha
Helix 18
AB9
A
459 465Right-handed alpha
Helix 19
AC1
A
468 471Right-handed 310
Helix 20
AC2
A
482 498Right-handed alpha
Helix 21
AC3
A
512 526Right-handed alpha
Helix 22
AC4
A
538 544Right-handed alpha
Helix 23
AC5
A
561 569Right-handed alpha
Helix 24
AC6
A
570 579Right-handed alpha
Helix 25
AC7
B
10 17Right-handed alpha
Helix 26
AC8
B
18 22Right-handed 310
Helix 27
AC9
B
23 54Right-handed alpha
Helix 28
AD1
B
60 110Right-handed alpha
Helix 29
AD2
B
112 117Right-handed 310
Helix 30
AD3
B
120 130Right-handed alpha
Helix 31
AD4
B
132 136Right-handed 310
Helix 32
AD5
B
140 164Right-handed alpha
Helix 33
AD6
B
168 213Right-handed alpha
Helix 34
AD7
B
213 221Right-handed alpha
Helix 35
AD8
B
222 270Right-handed alpha
Helix 36
AD9
B
273 278Right-handed alpha
Helix 37
AE1
B
282 323Right-handed alpha
Helix 38
AE2
B
381 390Right-handed alpha
Helix 39
AE3
B
411 417Right-handed alpha
Helix 40
AE4
B
433 438Right-handed alpha
Helix 41
AE5
B
446 457Right-handed alpha
Helix 42
AE6
B
459 465Right-handed alpha
Helix 43
AE7
B
468 471Right-handed 310
Helix 44
AE8
B
482 498Right-handed alpha
Helix 45
AE9
B
512 526Right-handed alpha
Helix 46
AF1
B
538 544Right-handed alpha
Helix 47
AF2
B
561 569Right-handed alpha
Helix 48
AF3
B
570 579Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8TSO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 362first strand
Strand 2
A
342 349anti-parallel
Strand 3
A
365 366anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 362first strand
Strand 2
A
342 349anti-parallel
Strand 3
A
397 402anti-parallel
Strand 4
A
405 406anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 423first strand
Strand 2
A
501 505parallel
Strand 3
A
531 535parallel
Strand 4
A
371 375parallel
Strand 5
A
547 552parallel
Strand 6
A
555 560anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 432first strand
Strand 2
A
473 474anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 362first strand
Strand 2
B
342 349anti-parallel
Strand 3
B
365 366anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 362first strand
Strand 2
B
342 349anti-parallel
Strand 3
B
397 402anti-parallel
Strand 4
B
405 406anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 423first strand
Strand 2
B
501 505parallel
Strand 3
B
531 535parallel
Strand 4
B
371 375parallel
Strand 5
B
547 552parallel
Strand 6
B
555 560anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
431 432first strand
Strand 2
B
473 474anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il