Analysis of interatomic Contacts of Structural Units in PDB entry:
8TTC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TTC entry

There are 5 chains in PDB entry 8TTC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 182
B
 LEU 490GLU 785
C
 LEU 2SER 182
D
 GLN 488SER 786
E
 ASP 1296PHE 1299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 8TTC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 26Right-handed alpha
Helix 2
AA2
A
42 53Right-handed alpha
Helix 3
AA3
A
95 107Right-handed alpha
Helix 4
AA4
B
502 519Right-handed alpha
Helix 5
AA5
B
520 546Right-handed alpha
Helix 6
AA6
B
552 574Right-handed alpha
Helix 7
AA7
B
577 595Right-handed alpha
Helix 8
AA8
B
598 618Right-handed alpha
Helix 9
AA9
B
620 638Right-handed alpha
Helix 10
AB1
B
642 659Right-handed alpha
Helix 11
AB2
B
662 674Right-handed alpha
Helix 12
AB3
B
675 680Right-handed alpha
Helix 13
AB4
B
682 686Right-handed 310
Helix 14
AB5
B
692 709Right-handed alpha
Helix 15
AB6
B
712 733Right-handed alpha
Helix 16
AB7
B
739 754Right-handed alpha
Helix 17
AB8
B
755 757Right-handed 310
Helix 18
AB9
B
760 779Right-handed alpha
Helix 19
AC1
C
19 26Right-handed alpha
Helix 20
AC2
C
42 53Right-handed alpha
Helix 21
AC3
C
95 107Right-handed alpha
Helix 22
AC4
D
496 500Right-handed 310
Helix 23
AC5
D
502 519Right-handed alpha
Helix 24
AC6
D
524 546Right-handed alpha
Helix 25
AC7
D
552 573Right-handed alpha
Helix 26
AC8
D
577 595Right-handed alpha
Helix 27
AC9
D
598 618Right-handed alpha
Helix 28
AD1
D
620 638Right-handed alpha
Helix 29
AD2
D
642 659Right-handed alpha
Helix 30
AD3
D
662 673Right-handed alpha
Helix 31
AD4
D
673 679Right-handed alpha
Helix 32
AD5
D
682 686Right-handed 310
Helix 33
AD6
D
692 709Right-handed alpha
Helix 34
AD7
D
712 732Right-handed alpha
Helix 35
AD8
D
739 754Right-handed alpha
Helix 36
AD9
D
760 779Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8TTC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
33 36parallel
Strand 3
A
2 6parallel
Strand 4
A
149 155anti-parallel
Strand 5
A
159 168anti-parallel
Strand 6
A
171 180anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
81 85anti-parallel
Strand 3
A
110 112parallel
Strand 4
A
127 131parallel
Strand 5
A
120 124anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 58first strand
Strand 2
C
33 36parallel
Strand 3
C
3 6parallel
Strand 4
C
149 155anti-parallel
Strand 5
C
159 168anti-parallel
Strand 6
C
171 180anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 77first strand
Strand 2
C
80 85anti-parallel
Strand 3
C
110 112parallel
Strand 4
C
127 131parallel
Strand 5
C
120 124anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il