Analysis of interatomic Contacts of Structural Units in PDB entry:
8TU6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TU6 entry

There are 2 chains in PDB entry 8TU6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 22THR 1053
B
 MET 326GLN 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8TU6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 53Right-handed alpha
Helix 2
AA2
A
54 62Right-handed 310
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
89 93Right-handed 310
Helix 5
AA5
A
107 122Right-handed alpha
Helix 6
AA6
A
124 128Right-handed 310
Helix 7
AA7
A
133 143Right-handed alpha
Helix 8
AA8
A
143 154Right-handed alpha
Helix 9
AA9
A
159 167Right-handed alpha
Helix 10
AB1
A
178 183Right-handed alpha
Helix 11
AB2
A
216 230Right-handed alpha
Helix 12
AB3
A
231 233Right-handed 310
Helix 13
AB4
A
235 248Right-handed alpha
Helix 14
AB5
A
266 269Right-handed 310
Helix 15
AB6
A
270 280Right-handed alpha
Helix 16
AB7
A
290 297Right-handed alpha
Helix 17
AB8
A
328 330Right-handed 310
Helix 18
AB9
A
413 417Right-handed 310
Helix 19
AC1
A
488 493Right-handed alpha
Helix 20
AC2
A
525 537Right-handed alpha
Helix 21
AC3
A
544 554Right-handed alpha
Helix 22
AC4
A
556 563Right-handed 310
Helix 23
AC5
A
564 570Right-handed alpha
Helix 24
AC6
A
576 588Right-handed alpha
Helix 25
AC7
A
594 599Right-handed alpha
Helix 26
AC8
A
600 603Right-handed 310
Helix 27
AC9
A
608 623Right-handed alpha
Helix 28
AD1
A
624 631Right-handed alpha
Helix 29
AD2
A
631 638Right-handed alpha
Helix 30
AD3
A
647 658Right-handed alpha
Helix 31
AD4
A
660 673Right-handed alpha
Helix 32
AD5
A
677 695Right-handed alpha
Helix 33
AD6
A
697 722Right-handed alpha
Helix 34
AD7
A
727 740Right-handed alpha
Helix 35
AD8
A
741 748Right-handed alpha
Helix 36
AD9
A
789 793Right-handed 310
Helix 37
AE1
A
809 827Right-handed alpha
Helix 38
AE2
A
856 862Right-handed alpha
Helix 39
AE3
A
875 885Right-handed alpha
Helix 40
AE4
A
886 888Right-handed 310
Helix 41
AE5
A
889 912Right-handed alpha
Helix 42
AE6
A
917 919Right-handed 310
Helix 43
AE7
A
939 944Right-handed 310
Helix 44
AE8
A
957 965Right-handed alpha
Helix 45
AE9
A
974 994Right-handed alpha
Helix 46
AF1
A
994 1004Right-handed alpha
Helix 47
AF2
A
1005 1009Right-handed 310
Helix 48
AF3
A
1019 1026Right-handed alpha
Helix 49
AF4
A
1031 1047Right-handed alpha
Helix 50
AF5
B
327 331Right-handed 310
Helix 51
AF6
B
339 348Right-handed alpha
Helix 52
AF7
B
400 411Right-handed alpha
Helix 53
AF8
B
412 416Right-handed 310
Helix 54
AF9
B
445 516Right-handed alpha
Helix 55
AG1
B
517 586Right-handed alpha
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There are 11 sheets in PDB entry 8TU6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
23 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
79 82anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 212first strand
Strand 2
A
189 197anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
260 261anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
484 485parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
371 372anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
400 410anti-parallel
Strand 4
A
418 428anti-parallel
Strand 5
A
446 447anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 752first strand
Strand 2
A
760 761anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 780anti-parallel
Strand 3
A
799 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 840anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
783 784first strand
Strand 2
A
796 797anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
921 923first strand
Strand 2
A
929 931anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 336first strand
Strand 2
B
355 359parallel
Strand 3
B
368 374anti-parallel
Strand 4
B
377 386anti-parallel
Strand 5
B
389 391anti-parallel
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