Analysis of interatomic Contacts of Structural Units in PDB entry:
8TU9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TU9 entry

There are 2 chains in PDB entry 8TU9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 49ILE 635
B
 LEU 49ILE 635
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8TU9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
163 182Right-handed alpha
Helix 2
AA2
A
240 260Right-handed alpha
Helix 3
AA3
A
277 279Right-handed 310
Helix 4
AA4
A
280 302Right-handed alpha
Helix 5
AA5
A
306 328Right-handed alpha
Helix 6
AA6
A
347 366Right-handed alpha
Helix 7
AA7
A
383 388Right-handed alpha
Helix 8
AA8
A
389 410Right-handed alpha
Helix 9
AA9
A
426 430Right-handed 310
Helix 10
AB1
A
437 447Right-handed alpha
Helix 11
AB2
A
458 463Right-handed alpha
Helix 12
AB3
A
475 496Right-handed alpha
Helix 13
AB4
A
499 523Right-handed alpha
Helix 14
AB5
A
539 558Right-handed alpha
Helix 15
AB6
A
573 578Right-handed alpha
Helix 16
AB7
A
579 589Right-handed alpha
Helix 17
AB8
A
604 629Right-handed alpha
Helix 18
AB9
B
163 182Right-handed alpha
Helix 19
AC1
B
240 260Right-handed alpha
Helix 20
AC2
B
277 279Right-handed 310
Helix 21
AC3
B
280 302Right-handed alpha
Helix 22
AC4
B
306 328Right-handed alpha
Helix 23
AC5
B
347 366Right-handed alpha
Helix 24
AC6
B
383 388Right-handed alpha
Helix 25
AC7
B
389 410Right-handed alpha
Helix 26
AC8
B
426 430Right-handed 310
Helix 27
AC9
B
437 447Right-handed alpha
Helix 28
AD1
B
458 463Right-handed alpha
Helix 29
AD2
B
475 496Right-handed alpha
Helix 30
AD3
B
499 523Right-handed alpha
Helix 31
AD4
B
539 558Right-handed alpha
Helix 32
AD5
B
573 578Right-handed alpha
Helix 33
AD6
B
579 589Right-handed alpha
Helix 34
AD7
B
604 629Right-handed alpha
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There are 4 sheets in PDB entry 8TU9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 104first strand
Strand 2
A
53 60anti-parallel
Strand 3
A
135 142parallel
Strand 4
A
148 155anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
69 73anti-parallel
Strand 3
A
109 113anti-parallel
Strand 4
A
123 127anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 104first strand
Strand 2
B
53 60anti-parallel
Strand 3
B
135 142parallel
Strand 4
B
148 155anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
69 73anti-parallel
Strand 3
B
109 113anti-parallel
Strand 4
B
123 127anti-parallel
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