Analysis of interatomic Contacts of Structural Units in PDB entry:
8TUL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TUL entry

There are 5 chains in PDB entry 8TUL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 84	LEU 400
B	PRO 84	LEU 400
C	PRO 84	LEU 400
D	PRO 84	LEU 400
E	PRO 84	LEU 400

There are 50 helices in PDB entry 8TUL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	112	Right-handed alpha
Helix 2	AA2	A	160	165	Right-handed alpha
Helix 3	AA3	A	166	173	Right-handed alpha
Helix 4	AA4	A	183	219	Right-handed alpha
Helix 5	AA5	A	227	261	Right-handed alpha
Helix 6	AA6	A	261	268	Right-handed alpha
Helix 7	AA7	A	269	275	Right-handed alpha
Helix 8	AA8	A	277	282	Right-handed alpha
Helix 9	AA9	A	288	359	Right-handed alpha
Helix 10	AB1	A	373	399	Right-handed alpha
Helix 11	AB2	B	103	112	Right-handed alpha
Helix 12	AB3	B	160	165	Right-handed alpha
Helix 13	AB4	B	166	173	Right-handed alpha
Helix 14	AB5	B	183	219	Right-handed alpha
Helix 15	AB6	B	227	261	Right-handed alpha
Helix 16	AB7	B	261	268	Right-handed alpha
Helix 17	AB8	B	269	275	Right-handed alpha
Helix 18	AB9	B	277	282	Right-handed alpha
Helix 19	AC1	B	288	359	Right-handed alpha
Helix 20	AC2	B	373	399	Right-handed alpha
Helix 21	AC3	C	103	112	Right-handed alpha
Helix 22	AC4	C	160	165	Right-handed alpha
Helix 23	AC5	C	166	173	Right-handed alpha
Helix 24	AC6	C	183	219	Right-handed alpha
Helix 25	AC7	C	227	261	Right-handed alpha
Helix 26	AC8	C	261	268	Right-handed alpha
Helix 27	AC9	C	269	275	Right-handed alpha
Helix 28	AD1	C	277	282	Right-handed alpha
Helix 29	AD2	C	288	359	Right-handed alpha
Helix 30	AD3	C	373	399	Right-handed alpha
Helix 31	AD4	D	103	112	Right-handed alpha
Helix 32	AD5	D	160	165	Right-handed alpha
Helix 33	AD6	D	166	173	Right-handed alpha
Helix 34	AD7	D	183	219	Right-handed alpha
Helix 35	AD8	D	227	261	Right-handed alpha
Helix 36	AD9	D	261	268	Right-handed alpha
Helix 37	AE1	D	269	275	Right-handed alpha
Helix 38	AE2	D	277	282	Right-handed alpha
Helix 39	AE3	D	288	359	Right-handed alpha
Helix 40	AE4	D	373	399	Right-handed alpha
Helix 41	AE5	E	103	112	Right-handed alpha
Helix 42	AE6	E	160	165	Right-handed alpha
Helix 43	AE7	E	166	173	Right-handed alpha
Helix 44	AE8	E	183	219	Right-handed alpha
Helix 45	AE9	E	227	261	Right-handed alpha
Helix 46	AF1	E	261	268	Right-handed alpha
Helix 47	AF2	E	269	275	Right-handed alpha
Helix 48	AF3	E	277	282	Right-handed alpha
Helix 49	AF4	E	288	359	Right-handed alpha
Helix 50	AF5	E	373	399	Right-handed alpha

There are 5 sheets in PDB entry 8TUL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	102	first strand
Strand 2	A	86	91	anti-parallel
Strand 3	A	149	152	anti-parallel
Strand 4	A	140	144	anti-parallel
Strand 5	A	133	137	anti-parallel
Strand 6	A	124	128	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	102	first strand
Strand 2	B	86	91	anti-parallel
Strand 3	B	149	152	anti-parallel
Strand 4	B	140	144	anti-parallel
Strand 5	B	133	137	anti-parallel
Strand 6	B	124	128	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	102	first strand
Strand 2	C	86	91	anti-parallel
Strand 3	C	149	152	anti-parallel
Strand 4	C	140	144	anti-parallel
Strand 5	C	133	137	anti-parallel
Strand 6	C	124	128	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	102	first strand
Strand 2	D	86	91	anti-parallel
Strand 3	D	149	152	anti-parallel
Strand 4	D	140	144	anti-parallel
Strand 5	D	133	137	anti-parallel
Strand 6	D	124	128	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	102	first strand
Strand 2	E	86	91	anti-parallel
Strand 3	E	149	152	anti-parallel
Strand 4	E	140	144	anti-parallel
Strand 5	E	133	137	anti-parallel
Strand 6	E	124	128	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TUL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TUL