Analysis of interatomic Contacts of Structural Units in PDB entry:
8TUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TUP entry

There are 5 chains in PDB entry 8TUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 83	LEU 400
B	ALA 83	LEU 400
C	ALA 83	LEU 400
D	ALA 83	LEU 400
E	ALA 83	LEU 400

There are 55 helices in PDB entry 8TUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	112	Right-handed alpha
Helix 2	AA2	A	116	120	Right-handed 310
Helix 3	AA3	A	161	166	Right-handed alpha
Helix 4	AA4	A	166	172	Right-handed alpha
Helix 5	AA5	A	183	219	Right-handed alpha
Helix 6	AA6	A	227	261	Right-handed alpha
Helix 7	AA7	A	261	268	Right-handed alpha
Helix 8	AA8	A	269	275	Right-handed alpha
Helix 9	AA9	A	277	282	Right-handed alpha
Helix 10	AB1	A	288	360	Right-handed alpha
Helix 11	AB2	A	372	399	Right-handed alpha
Helix 12	AB3	B	104	112	Right-handed alpha
Helix 13	AB4	B	116	120	Right-handed 310
Helix 14	AB5	B	161	166	Right-handed alpha
Helix 15	AB6	B	166	172	Right-handed alpha
Helix 16	AB7	B	183	219	Right-handed alpha
Helix 17	AB8	B	227	261	Right-handed alpha
Helix 18	AB9	B	261	268	Right-handed alpha
Helix 19	AC1	B	269	275	Right-handed alpha
Helix 20	AC2	B	277	282	Right-handed alpha
Helix 21	AC3	B	288	360	Right-handed alpha
Helix 22	AC4	B	372	399	Right-handed alpha
Helix 23	AC5	C	104	112	Right-handed alpha
Helix 24	AC6	C	116	120	Right-handed 310
Helix 25	AC7	C	161	166	Right-handed alpha
Helix 26	AC8	C	166	172	Right-handed alpha
Helix 27	AC9	C	183	219	Right-handed alpha
Helix 28	AD1	C	227	261	Right-handed alpha
Helix 29	AD2	C	261	268	Right-handed alpha
Helix 30	AD3	C	269	275	Right-handed alpha
Helix 31	AD4	C	277	282	Right-handed alpha
Helix 32	AD5	C	288	360	Right-handed alpha
Helix 33	AD6	C	372	399	Right-handed alpha
Helix 34	AD7	D	104	112	Right-handed alpha
Helix 35	AD8	D	116	120	Right-handed 310
Helix 36	AD9	D	161	166	Right-handed alpha
Helix 37	AE1	D	166	172	Right-handed alpha
Helix 38	AE2	D	183	219	Right-handed alpha
Helix 39	AE3	D	227	261	Right-handed alpha
Helix 40	AE4	D	261	268	Right-handed alpha
Helix 41	AE5	D	269	275	Right-handed alpha
Helix 42	AE6	D	277	282	Right-handed alpha
Helix 43	AE7	D	288	360	Right-handed alpha
Helix 44	AE8	D	372	399	Right-handed alpha
Helix 45	AE9	E	104	112	Right-handed alpha
Helix 46	AF1	E	116	120	Right-handed 310
Helix 47	AF2	E	161	166	Right-handed alpha
Helix 48	AF3	E	166	172	Right-handed alpha
Helix 49	AF4	E	183	219	Right-handed alpha
Helix 50	AF5	E	227	261	Right-handed alpha
Helix 51	AF6	E	261	268	Right-handed alpha
Helix 52	AF7	E	269	275	Right-handed alpha
Helix 53	AF8	E	277	282	Right-handed alpha
Helix 54	AF9	E	288	360	Right-handed alpha
Helix 55	AG1	E	372	399	Right-handed alpha

There are 5 sheets in PDB entry 8TUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	103	first strand
Strand 2	A	85	92	anti-parallel
Strand 3	A	148	152	anti-parallel
Strand 4	A	140	144	anti-parallel
Strand 5	A	132	137	anti-parallel
Strand 6	A	124	129	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	103	first strand
Strand 2	B	85	92	anti-parallel
Strand 3	B	148	152	anti-parallel
Strand 4	B	140	144	anti-parallel
Strand 5	B	132	137	anti-parallel
Strand 6	B	124	129	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	103	first strand
Strand 2	C	85	92	anti-parallel
Strand 3	C	148	152	anti-parallel
Strand 4	C	140	144	anti-parallel
Strand 5	C	132	137	anti-parallel
Strand 6	C	124	129	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	103	first strand
Strand 2	D	85	92	anti-parallel
Strand 3	D	148	152	anti-parallel
Strand 4	D	140	144	anti-parallel
Strand 5	D	132	137	anti-parallel
Strand 6	D	124	129	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	103	first strand
Strand 2	E	85	92	anti-parallel
Strand 3	E	148	152	anti-parallel
Strand 4	E	140	144	anti-parallel
Strand 5	E	132	137	anti-parallel
Strand 6	E	124	129	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TUP