Analysis of interatomic Contacts of Structural Units in PDB entry:
8TV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TV1 entry

There are 3 chains in PDB entry 8TV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLU 1LYS 238
E
 ILE 2CYS 232
C
 LYS 27PRO 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8TV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
29 32Right-handed 310
Helix 2
AA2
D
95 99Right-handed 310
Helix 3
AA3
D
211 213Right-handed 310
Helix 4
AA4
D
225 228Right-handed 310
Helix 5
AA5
E
95 99Right-handed 310
Helix 6
AA6
E
139 145Right-handed alpha
Helix 7
AA7
E
201 206Right-handed alpha
Helix 8
AA8
C
135 139Right-handed 310
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There are 19 sheets in PDB entry 8TV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
19 26anti-parallel
Strand 3
D
86 91anti-parallel
Strand 4
D
76 81anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
D
131 135parallel
Strand 3
D
100 107anti-parallel
Strand 4
D
34 44anti-parallel
Strand 5
D
50 57anti-parallel
Strand 6
D
62 67anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 117first strand
Strand 2
C
53 57anti-parallel
Strand 3
C
64 69anti-parallel
Strand 4
C
189 201anti-parallel
Strand 5
C
94 102anti-parallel
Strand 6
C
164 170anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 33first strand
Strand 2
C
189 201anti-parallel
Strand 3
C
214 215anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
144 148first strand
Strand 2
D
159 169anti-parallel
Strand 3
D
200 209anti-parallel
Strand 4
D
187 189anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
144 148first strand
Strand 2
D
159 169anti-parallel
Strand 3
D
200 209anti-parallel
Strand 4
D
193 194anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
175 178first strand
Strand 2
D
219 224anti-parallel
Strand 3
D
229 234anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
86 91anti-parallel
Strand 4
E
76 80anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
120 125parallel
Strand 3
E
100 105anti-parallel
Strand 4
E
40 44anti-parallel
Strand 5
E
50 55anti-parallel
Strand 6
E
66 67anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
132 136first strand
Strand 2
E
147 157anti-parallel
Strand 3
E
191 200anti-parallel
Strand 4
E
177 181anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
171 172first strand
Strand 2
E
163 168anti-parallel
Strand 3
E
209 216anti-parallel
Strand 4
E
219 228anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 46first strand
Strand 2
C
79 82anti-parallel
Strand 3
C
177 184anti-parallel
Strand 4
C
86 87anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 46first strand
Strand 2
C
79 82anti-parallel
Strand 3
C
177 184anti-parallel
Strand 4
C
119 126anti-parallel
Strand 5
C
140 145anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 206first strand
Strand 2
C
209 211anti-parallel
Strand 3
C
229 230anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
224 227first strand
Strand 2
C
244 247anti-parallel
Strand 3
C
253 257anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 235first strand
Strand 2
C
261 262anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
266 269first strand
Strand 2
C
272 275anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
280 281first strand
Strand 2
C
291 292anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 314first strand
Strand 2
C
326 327anti-parallel
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