Analysis of interatomic Contacts of Structural Units in PDB entry:
8TV2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TV2 entry

There are 4 chains in PDB entry 8TV2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLU 1CYS 240
E
 ILE 2CYS 232
A
 GLU 1LYS 238
B
 ILE 2GLU 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8TV2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
29 33Right-handed 310
Helix 2
AA2
D
69 72Right-handed 310
Helix 3
AA3
D
82 84Right-handed 310
Helix 4
AA4
D
95 99Right-handed 310
Helix 5
AA5
D
211 214Right-handed 310
Helix 6
AA6
D
225 228Right-handed 310
Helix 7
AA7
E
95 99Right-handed 310
Helix 8
AA8
E
139 144Right-handed alpha
Helix 9
AA9
E
201 206Right-handed alpha
Helix 10
AB1
A
95 99Right-handed 310
Helix 11
AB2
A
110 114Right-handed 310
Helix 12
AB3
A
180 182Right-handed 310
Helix 13
AB4
A
211 213Right-handed 310
Helix 14
AB5
A
225 228Right-handed 310
Helix 15
AB6
B
95 99Right-handed 310
Helix 16
AB7
B
139 144Right-handed alpha
Helix 17
AB8
B
201 206Right-handed alpha
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There are 20 sheets in PDB entry 8TV2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
19 26anti-parallel
Strand 3
D
86 91anti-parallel
Strand 4
D
76 81anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
D
131 135parallel
Strand 3
D
100 107anti-parallel
Strand 4
D
35 44anti-parallel
Strand 5
D
51 57anti-parallel
Strand 6
D
62 67anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
D
131 135parallel
Strand 3
D
100 107anti-parallel
Strand 4
D
124 127anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 120first strand
Strand 2
A
62 67anti-parallel
Strand 3
A
50 57anti-parallel
Strand 4
A
35 44anti-parallel
Strand 5
A
100 107anti-parallel
Strand 6
A
131 135anti-parallel
Strand 7
A
11 13parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 120first strand
Strand 2
A
62 67anti-parallel
Strand 3
A
50 57anti-parallel
Strand 4
A
35 44anti-parallel
Strand 5
A
100 107anti-parallel
Strand 6
A
124 127anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
144 148first strand
Strand 2
D
159 169anti-parallel
Strand 3
D
200 209anti-parallel
Strand 4
D
187 189anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
144 148first strand
Strand 2
D
159 169anti-parallel
Strand 3
D
200 209anti-parallel
Strand 4
D
193 194anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
175 178first strand
Strand 2
D
218 224anti-parallel
Strand 3
D
229 235anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
86 91anti-parallel
Strand 4
E
76 83anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
120 125parallel
Strand 3
E
100 106anti-parallel
Strand 4
E
39 44anti-parallel
Strand 5
E
51 55anti-parallel
Strand 6
E
66 67anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
132 136first strand
Strand 2
E
147 157anti-parallel
Strand 3
E
191 200anti-parallel
Strand 4
E
177 181anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
171 173first strand
Strand 2
E
163 168anti-parallel
Strand 3
E
209 216anti-parallel
Strand 4
E
219 228anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
86 91anti-parallel
Strand 4
A
76 81anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
159 169anti-parallel
Strand 3
A
200 209anti-parallel
Strand 4
A
187 189anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
159 169anti-parallel
Strand 3
A
200 209anti-parallel
Strand 4
A
193 194anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
218 224anti-parallel
Strand 3
A
229 235anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
86 91anti-parallel
Strand 4
B
76 80anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
120 125parallel
Strand 3
B
100 106anti-parallel
Strand 4
B
39 44anti-parallel
Strand 5
B
51 55anti-parallel
Strand 6
B
66 67anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 136first strand
Strand 2
B
147 157anti-parallel
Strand 3
B
191 200anti-parallel
Strand 4
B
177 181anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
163 168anti-parallel
Strand 3
B
209 216anti-parallel
Strand 4
B
219 228anti-parallel
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