Analysis of interatomic Contacts of Structural Units in PDB entry:
8TV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TV8 entry

There is 1 chain in PDB entry 8TV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 34ILE 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8TV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 66Right-handed alpha
Helix 2
AA2
A
119 131Right-handed alpha
Helix 3
AA3
A
153 164Right-handed alpha
Helix 4
AA4
A
164 169Right-handed alpha
Helix 5
AA5
A
170 174Right-handed 310
Helix 6
AA6
A
197 203Right-handed alpha
Helix 7
AA7
A
204 208Right-handed 310
Helix 8
AA8
A
211 221Right-handed alpha
Helix 9
AA9
A
225 230Right-handed alpha
Helix 10
AB1
A
273 283Right-handed alpha
Helix 11
AB2
A
293 295Right-handed 310
Helix 12
AB3
A
296 301Right-handed alpha
Helix 13
AB4
A
331 342Right-handed alpha
Helix 14
AB5
A
343 353Right-handed alpha
Helix 15
AB6
A
367 373Right-handed 310
Helix 16
AB7
A
382 391Right-handed alpha
Helix 17
AB8
A
392 394Right-handed 310
Helix 18
AB9
A
411 426Right-handed alpha
Helix 19
AC1
A
436 442Right-handed alpha
Helix 20
AC2
A
464 474Right-handed alpha
Helix 21
AC3
A
475 478Right-handed 310
Helix 22
AC4
A
489 500Right-handed alpha
Helix 23
AC5
A
504 523Right-handed alpha
Helix 24
AC6
A
553 557Right-handed 310
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There are 5 sheets in PDB entry 8TV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 243first strand
Strand 2
A
247 252anti-parallel
Strand 3
A
265 269anti-parallel
Strand 4
A
35 39parallel
Strand 5
A
288 290parallel
Strand 6
A
533 538anti-parallel
Strand 7
A
307 312anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
80 81anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
95 100anti-parallel
Strand 3
A
186 191anti-parallel
Strand 4
A
176 183anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
525 531anti-parallel
Strand 3
A
316 322anti-parallel
Strand 4
A
453 459anti-parallel
Strand 5
A
396 402parallel
Strand 6
A
429 435parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 542first strand
Strand 2
A
558 559anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il