Analysis of interatomic Contacts of Structural Units in PDB entry:
8TVB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TVB entry

There are 3 chains in PDB entry 8TVB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 123	THR 547
B	ALA 123	THR 547
C	ALA 123	THR 547

There are 51 helices in PDB entry 8TVB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	125	130	Right-handed alpha
Helix 2	AA2	A	161	165	Right-handed 310
Helix 3	AA3	A	172	196	Right-handed alpha
Helix 4	AA4	A	213	217	Right-handed alpha
Helix 5	AA5	A	221	241	Right-handed alpha
Helix 6	AA6	A	243	249	Right-handed alpha
Helix 7	AA7	A	271	279	Right-handed alpha
Helix 8	AA8	A	280	283	Right-handed 310
Helix 9	AA9	A	287	311	Right-handed alpha
Helix 10	AB1	A	324	328	Right-handed alpha
Helix 11	AB2	A	329	332	Right-handed 310
Helix 12	AB3	A	334	343	Right-handed alpha
Helix 13	AB4	A	348	355	Right-handed alpha
Helix 14	AB5	A	424	427	Right-handed 310
Helix 15	AB6	A	445	453	Right-handed alpha
Helix 16	AB7	A	455	459	Right-handed 310
Helix 17	AB8	A	533	537	Right-handed 310
Helix 18	AB9	B	125	130	Right-handed alpha
Helix 19	AC1	B	161	165	Right-handed 310
Helix 20	AC2	B	172	196	Right-handed alpha
Helix 21	AC3	B	213	217	Right-handed alpha
Helix 22	AC4	B	221	241	Right-handed alpha
Helix 23	AC5	B	243	249	Right-handed alpha
Helix 24	AC6	B	271	279	Right-handed alpha
Helix 25	AC7	B	280	283	Right-handed 310
Helix 26	AC8	B	287	311	Right-handed alpha
Helix 27	AC9	B	324	328	Right-handed alpha
Helix 28	AD1	B	329	332	Right-handed 310
Helix 29	AD2	B	334	343	Right-handed alpha
Helix 30	AD3	B	348	355	Right-handed alpha
Helix 31	AD4	B	424	427	Right-handed 310
Helix 32	AD5	B	445	453	Right-handed alpha
Helix 33	AD6	B	455	459	Right-handed 310
Helix 34	AD7	B	533	537	Right-handed 310
Helix 35	AD8	C	125	130	Right-handed alpha
Helix 36	AD9	C	161	165	Right-handed 310
Helix 37	AE1	C	172	196	Right-handed alpha
Helix 38	AE2	C	213	217	Right-handed alpha
Helix 39	AE3	C	221	241	Right-handed alpha
Helix 40	AE4	C	243	249	Right-handed alpha
Helix 41	AE5	C	271	279	Right-handed alpha
Helix 42	AE6	C	280	283	Right-handed 310
Helix 43	AE7	C	287	311	Right-handed alpha
Helix 44	AE8	C	324	328	Right-handed alpha
Helix 45	AE9	C	329	332	Right-handed 310
Helix 46	AF1	C	334	343	Right-handed alpha
Helix 47	AF2	C	348	355	Right-handed alpha
Helix 48	AF3	C	424	427	Right-handed 310
Helix 49	AF4	C	445	453	Right-handed alpha
Helix 50	AF5	C	455	459	Right-handed 310
Helix 51	AF6	C	533	537	Right-handed 310

There are 15 sheets in PDB entry 8TVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	429	first strand
Strand 2	A	433	436	anti-parallel
Strand 3	A	134	145	parallel
Strand 4	A	381	394	anti-parallel
Strand 5	A	411	415	anti-parallel
Strand 6	A	418	422	anti-parallel
Strand 7	A	441	442	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	258	first strand
Strand 2	A	264	269	anti-parallel
Strand 3	A	149	156	parallel
Strand 4	A	371	378	anti-parallel
Strand 5	A	359	366	anti-parallel
Strand 6	A	322	323	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	209	212	anti-parallel
Strand 3	C	521	524	parallel
Strand 4	C	515	518	anti-parallel
Strand 5	C	488	490	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	C	472	475	anti-parallel
Strand 3	C	478	481	anti-parallel
Strand 4	C	506	508	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	403	406	anti-parallel
Strand 3	A	461	463	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	508	first strand
Strand 2	A	478	481	anti-parallel
Strand 3	A	472	475	anti-parallel
Strand 4	B	218	220	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	515	518	anti-parallel
Strand 3	A	521	524	anti-parallel
Strand 4	B	209	212	parallel
Strand 5	B	197	199	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	429	first strand
Strand 2	B	433	436	anti-parallel
Strand 3	B	134	145	parallel
Strand 4	B	381	394	anti-parallel
Strand 5	B	411	415	anti-parallel
Strand 6	B	418	422	anti-parallel
Strand 7	B	441	442	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	258	first strand
Strand 2	B	264	269	anti-parallel
Strand 3	B	149	156	parallel
Strand 4	B	371	378	anti-parallel
Strand 5	B	359	366	anti-parallel
Strand 6	B	322	323	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	398	first strand
Strand 2	B	403	406	anti-parallel
Strand 3	B	461	463	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	506	508	first strand
Strand 2	B	478	481	anti-parallel
Strand 3	B	472	475	anti-parallel
Strand 4	C	218	220	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	490	first strand
Strand 2	B	515	518	anti-parallel
Strand 3	B	521	524	anti-parallel
Strand 4	C	209	212	parallel
Strand 5	C	197	199	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	428	429	first strand
Strand 2	C	433	436	anti-parallel
Strand 3	C	134	145	parallel
Strand 4	C	381	394	anti-parallel
Strand 5	C	411	415	anti-parallel
Strand 6	C	418	422	anti-parallel
Strand 7	C	441	442	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	258	first strand
Strand 2	C	264	269	anti-parallel
Strand 3	C	149	156	parallel
Strand 4	C	371	378	anti-parallel
Strand 5	C	359	366	anti-parallel
Strand 6	C	322	323	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	398	first strand
Strand 2	C	403	406	anti-parallel
Strand 3	C	461	463	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TVB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TVB