Analysis of interatomic Contacts of Structural Units in PDB entry:
8TVE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TVE entry

There are 3 chains in PDB entry 8TVE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 23	LEU 476
B	LEU 23	LEU 476
C	LEU 23	LEU 476

There are 30 helices in PDB entry 8TVE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	32	Right-handed alpha
Helix 2	AA2	A	67	92	Right-handed alpha
Helix 3	AA3	A	141	178	Right-handed alpha
Helix 4	AA4	A	178	207	Right-handed alpha
Helix 5	AA5	A	209	215	Right-handed alpha
Helix 6	AA6	A	222	230	Right-handed alpha
Helix 7	AA7	A	233	242	Right-handed alpha
Helix 8	AA8	A	244	254	Right-handed alpha
Helix 9	AA9	A	344	353	Right-handed alpha
Helix 10	AB1	A	452	476	Right-handed alpha
Helix 11	AB2	B	24	32	Right-handed alpha
Helix 12	AB3	B	67	92	Right-handed alpha
Helix 13	AB4	B	141	178	Right-handed alpha
Helix 14	AB5	B	178	207	Right-handed alpha
Helix 15	AB6	B	209	215	Right-handed alpha
Helix 16	AB7	B	222	230	Right-handed alpha
Helix 17	AB8	B	233	242	Right-handed alpha
Helix 18	AB9	B	244	254	Right-handed alpha
Helix 19	AC1	B	344	353	Right-handed alpha
Helix 20	AC2	B	452	476	Right-handed alpha
Helix 21	AC3	C	24	32	Right-handed alpha
Helix 22	AC4	C	67	92	Right-handed alpha
Helix 23	AC5	C	141	178	Right-handed alpha
Helix 24	AC6	C	178	207	Right-handed alpha
Helix 25	AC7	C	209	215	Right-handed alpha
Helix 26	AC8	C	222	230	Right-handed alpha
Helix 27	AC9	C	233	242	Right-handed alpha
Helix 28	AD1	C	244	254	Right-handed alpha
Helix 29	AD2	C	344	353	Right-handed alpha
Helix 30	AD3	C	452	476	Right-handed alpha

There are 18 sheets in PDB entry 8TVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	38	first strand
Strand 2	A	287	293	anti-parallel
Strand 3	A	310	313	anti-parallel
Strand 4	A	318	321	anti-parallel
Strand 5	A	340	342	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	41	43	anti-parallel
Strand 3	A	333	335	parallel
Strand 4	A	327	328	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	258	265	anti-parallel
Strand 3	A	270	277	anti-parallel
Strand 4	A	48	55	anti-parallel
Strand 5	B	431	433	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	298	first strand
Strand 2	A	301	304	anti-parallel
Strand 3	A	361	362	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	374	first strand
Strand 2	A	377	380	anti-parallel
Strand 3	A	405	407	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	387	389	anti-parallel
Strand 3	A	414	417	anti-parallel
Strand 4	A	420	423	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	433	first strand
Strand 2	C	48	55	parallel
Strand 3	C	270	277	anti-parallel
Strand 4	C	258	265	anti-parallel
Strand 5	C	219	220	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	38	first strand
Strand 2	B	287	293	anti-parallel
Strand 3	B	310	313	anti-parallel
Strand 4	B	318	321	anti-parallel
Strand 5	B	340	342	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	41	43	anti-parallel
Strand 3	B	333	335	parallel
Strand 4	B	327	328	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	258	265	anti-parallel
Strand 3	B	270	277	anti-parallel
Strand 4	B	48	55	anti-parallel
Strand 5	C	431	433	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	B	301	304	anti-parallel
Strand 3	B	361	362	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	374	first strand
Strand 2	B	377	380	anti-parallel
Strand 3	B	405	407	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	395	first strand
Strand 2	B	387	389	anti-parallel
Strand 3	B	414	417	anti-parallel
Strand 4	B	420	423	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	38	first strand
Strand 2	C	287	293	anti-parallel
Strand 3	C	310	313	anti-parallel
Strand 4	C	318	321	anti-parallel
Strand 5	C	340	342	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	41	43	anti-parallel
Strand 3	C	333	335	parallel
Strand 4	C	327	328	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	298	first strand
Strand 2	C	301	304	anti-parallel
Strand 3	C	361	362	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	374	first strand
Strand 2	C	377	380	anti-parallel
Strand 3	C	405	407	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	395	first strand
Strand 2	C	387	389	anti-parallel
Strand 3	C	414	417	anti-parallel
Strand 4	C	420	423	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TVE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TVE