Analysis of interatomic Contacts of Structural Units in PDB entry:
8TVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TVG entry

There are 3 chains in PDB entry 8TVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 23	ASN 459
B	LEU 23	ASN 459
C	LEU 23	ASN 459

There are 27 helices in PDB entry 8TVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed alpha
Helix 2	AA2	A	63	92	Right-handed alpha
Helix 3	AA3	A	160	177	Right-handed alpha
Helix 4	AA4	A	177	215	Right-handed alpha
Helix 5	AA5	A	222	230	Right-handed alpha
Helix 6	AA6	A	233	242	Right-handed alpha
Helix 7	AA7	A	244	255	Right-handed alpha
Helix 8	AA8	A	344	352	Right-handed alpha
Helix 9	AA9	A	451	456	Right-handed alpha
Helix 10	AB1	B	25	30	Right-handed alpha
Helix 11	AB2	B	63	92	Right-handed alpha
Helix 12	AB3	B	160	177	Right-handed alpha
Helix 13	AB4	B	177	215	Right-handed alpha
Helix 14	AB5	B	222	230	Right-handed alpha
Helix 15	AB6	B	233	242	Right-handed alpha
Helix 16	AB7	B	244	255	Right-handed alpha
Helix 17	AB8	B	344	352	Right-handed alpha
Helix 18	AB9	B	451	456	Right-handed alpha
Helix 19	AC1	C	25	30	Right-handed alpha
Helix 20	AC2	C	63	92	Right-handed alpha
Helix 21	AC3	C	160	177	Right-handed alpha
Helix 22	AC4	C	177	215	Right-handed alpha
Helix 23	AC5	C	222	230	Right-handed alpha
Helix 24	AC6	C	233	242	Right-handed alpha
Helix 25	AC7	C	244	255	Right-handed alpha
Helix 26	AC8	C	344	352	Right-handed alpha
Helix 27	AC9	C	451	456	Right-handed alpha

There are 18 sheets in PDB entry 8TVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	258	265	anti-parallel
Strand 3	A	270	293	anti-parallel
Strand 4	A	33	55	anti-parallel
Strand 5	A	310	313	first strand
Strand 6	A	318	320	anti-parallel
Strand 7	A	341	342	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	332	336	anti-parallel
Strand 3	A	33	55	parallel
Strand 4	A	270	293	anti-parallel
Strand 5	B	427	433	first strand

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	B	438	439	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	297	first strand
Strand 2	A	302	305	anti-parallel
Strand 3	A	360	362	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	374	first strand
Strand 2	A	377	380	anti-parallel
Strand 3	A	405	407	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	387	389	anti-parallel
Strand 3	A	415	417	anti-parallel
Strand 4	A	420	422	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	433	first strand
Strand 2	C	33	55	parallel
Strand 3	C	270	293	anti-parallel
Strand 4	C	332	336	first strand
Strand 5	C	327	328	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	258	265	anti-parallel
Strand 3	C	270	293	anti-parallel
Strand 4	C	33	55	anti-parallel
Strand 5	C	310	313	first strand
Strand 6	C	318	320	anti-parallel
Strand 7	C	341	342	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	439	first strand
Strand 2	C	60	61	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	258	265	anti-parallel
Strand 3	B	270	293	anti-parallel
Strand 4	B	33	55	anti-parallel
Strand 5	B	310	313	first strand
Strand 6	B	318	320	anti-parallel
Strand 7	B	341	342	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	332	336	anti-parallel
Strand 3	B	33	55	parallel
Strand 4	B	270	293	anti-parallel
Strand 5	C	427	433	first strand

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	C	438	439	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	297	first strand
Strand 2	B	302	305	anti-parallel
Strand 3	B	360	362	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	374	first strand
Strand 2	B	377	380	anti-parallel
Strand 3	B	405	407	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	387	389	anti-parallel
Strand 3	B	415	417	anti-parallel
Strand 4	B	420	422	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	302	305	anti-parallel
Strand 3	C	360	362	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	374	first strand
Strand 2	C	377	380	anti-parallel
Strand 3	C	405	407	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	387	389	anti-parallel
Strand 3	C	415	417	anti-parallel
Strand 4	C	420	422	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TVG