Analysis of interatomic Contacts of Structural Units in PDB entry:
8TVN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TVN entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 8TVN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 167	ALA 335
A	VAL 343	MET 344
A	ARG 347	ALA 459
B	ARG 164	ALA 335
B	VAL 343	MET 344
B	ARG 347	ALA 459
C	ARG 164	ALA 335
C	VAL 343	MET 344
C	ARG 347	THR 458
D	PHE 165	ALA 335
D	VAL 343	MET 344
D	ARG 347	ALA 459

There are 66 helices in PDB entry 8TVN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	169	177	Right-handed alpha
Helix 2	AA2	A	184	188	Right-handed 310
Helix 3	AA3	A	224	225	Right-handed 310
Helix 4	AA4	A	227	227	Right-handed 310
Helix 5	AA5	A	228	240	Right-handed alpha
Helix 6	AA6	A	269	276	Right-handed alpha
Helix 7	AA7	A	277	280	Right-handed 310
Helix 8	AA8	A	284	305	Right-handed alpha
Helix 9	AA9	A	313	315	Right-handed 310
Helix 10	AB1	A	351	355	Right-handed 310
Helix 11	AB2	A	356	361	Right-handed alpha
Helix 12	AB3	A	366	383	Right-handed alpha
Helix 13	AB4	A	395	397	Right-handed 310
Helix 14	AB5	A	398	405	Right-handed alpha
Helix 15	AB6	A	409	414	Right-handed alpha
Helix 16	AB7	A	422	437	Right-handed alpha
Helix 17	AB8	A	440	444	Right-handed 310
Helix 18	AB9	A	446	458	Right-handed alpha
Helix 19	AC1	B	169	177	Right-handed alpha
Helix 20	AC2	B	184	188	Right-handed 310
Helix 21	AC3	B	222	240	Right-handed alpha
Helix 22	AC4	B	269	275	Right-handed alpha
Helix 23	AC5	B	276	280	Right-handed 310
Helix 24	AC6	B	284	305	Right-handed alpha
Helix 25	AC7	B	313	315	Right-handed 310
Helix 26	AC8	B	351	355	Right-handed 310
Helix 27	AC9	B	356	361	Right-handed alpha
Helix 28	AD1	B	366	383	Right-handed alpha
Helix 29	AD2	B	395	397	Right-handed 310
Helix 30	AD3	B	398	405	Right-handed alpha
Helix 31	AD4	B	409	414	Right-handed alpha
Helix 32	AD5	B	422	437	Right-handed alpha
Helix 33	AD6	B	440	444	Right-handed 310
Helix 34	AD7	B	446	458	Right-handed alpha
Helix 35	AD8	C	169	177	Right-handed alpha
Helix 36	AD9	C	184	188	Right-handed 310
Helix 37	AE1	C	222	240	Right-handed alpha
Helix 38	AE2	C	269	275	Right-handed alpha
Helix 39	AE3	C	276	280	Right-handed 310
Helix 40	AE4	C	284	305	Right-handed alpha
Helix 41	AE5	C	313	315	Right-handed 310
Helix 42	AE6	C	351	355	Right-handed 310
Helix 43	AE7	C	356	361	Right-handed alpha
Helix 44	AE8	C	365	383	Right-handed alpha
Helix 45	AE9	C	395	397	Right-handed 310
Helix 46	AF1	C	398	405	Right-handed alpha
Helix 47	AF2	C	409	414	Right-handed alpha
Helix 48	AF3	C	422	437	Right-handed alpha
Helix 49	AF4	C	440	444	Right-handed 310
Helix 50	AF5	C	446	458	Right-handed alpha
Helix 51	AF6	D	169	177	Right-handed alpha
Helix 52	AF7	D	184	188	Right-handed 310
Helix 53	AF8	D	222	237	Right-handed alpha
Helix 54	AF9	D	269	275	Right-handed alpha
Helix 55	AG1	D	276	280	Right-handed 310
Helix 56	AG2	D	284	305	Right-handed alpha
Helix 57	AG3	D	313	315	Right-handed 310
Helix 58	AG4	D	351	355	Right-handed 310
Helix 59	AG5	D	356	361	Right-handed alpha
Helix 60	AG6	D	365	383	Right-handed alpha
Helix 61	AG7	D	395	397	Right-handed 310
Helix 62	AG8	D	398	405	Right-handed alpha
Helix 63	AG9	D	409	414	Right-handed alpha
Helix 64	AH1	D	422	437	Right-handed alpha
Helix 65	AH2	D	440	444	Right-handed 310
Helix 66	AH3	D	446	458	Right-handed alpha

There are 12 sheets in PDB entry 8TVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	194	first strand
Strand 2	A	198	205	anti-parallel
Strand 3	A	208	215	anti-parallel
Strand 4	A	259	263	anti-parallel
Strand 5	A	248	252	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	319	first strand
Strand 2	A	325	327	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	363	364	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	248	252	parallel
Strand 3	B	258	263	anti-parallel
Strand 4	B	208	215	anti-parallel
Strand 5	B	198	205	anti-parallel
Strand 6	B	191	194	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	325	327	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	363	364	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	248	252	parallel
Strand 3	C	259	263	anti-parallel
Strand 4	C	208	215	anti-parallel
Strand 5	C	198	205	anti-parallel
Strand 6	C	191	194	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	319	first strand
Strand 2	C	325	327	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	344	first strand
Strand 2	C	363	364	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	167	first strand
Strand 2	D	248	252	parallel
Strand 3	D	258	263	anti-parallel
Strand 4	D	208	215	anti-parallel
Strand 5	D	199	205	anti-parallel
Strand 6	D	191	194	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	319	first strand
Strand 2	D	325	327	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	344	first strand
Strand 2	D	363	364	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TVN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TVN