Analysis of interatomic Contacts of Structural Units in PDB entry:
8TWR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TWR entry

There are 3 chains in PDB entry 8TWR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASN 21LEU 499
A
 ASN 21LEU 499
B
 ASN 21LEU 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 8TWR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
21 48Right-handed alpha
Helix 2
AA2
C
50 55Right-handed alpha
Helix 3
AA3
C
56 73Right-handed alpha
Helix 4
AA4
C
83 88Right-handed 310
Helix 5
AA5
C
113 124Right-handed alpha
Helix 6
AA6
C
129 148Right-handed alpha
Helix 7
AA7
C
150 157Right-handed alpha
Helix 8
AA8
C
160 167Right-handed 310
Helix 9
AA9
C
177 184Right-handed alpha
Helix 10
AB1
C
185 203Right-handed alpha
Helix 11
AB2
C
204 207Right-handed 310
Helix 12
AB3
C
208 230Right-handed alpha
Helix 13
AB4
C
232 245Right-handed alpha
Helix 14
AB5
C
249 266Right-handed alpha
Helix 15
AB6
C
277 288Right-handed alpha
Helix 16
AB7
C
290 295Right-handed alpha
Helix 17
AB8
C
301 310Right-handed alpha
Helix 18
AB9
C
321 334Right-handed alpha
Helix 19
AC1
C
340 349Right-handed alpha
Helix 20
AC2
C
354 358Right-handed 310
Helix 21
AC3
C
421 429Right-handed alpha
Helix 22
AC4
C
438 450Right-handed alpha
Helix 23
AC5
A
22 48Right-handed alpha
Helix 24
AC6
A
50 55Right-handed alpha
Helix 25
AC7
A
56 73Right-handed alpha
Helix 26
AC8
A
84 88Right-handed 310
Helix 27
AC9
A
113 124Right-handed alpha
Helix 28
AD1
A
129 148Right-handed alpha
Helix 29
AD2
A
150 157Right-handed alpha
Helix 30
AD3
A
160 167Right-handed 310
Helix 31
AD4
A
177 184Right-handed alpha
Helix 32
AD5
A
185 203Right-handed alpha
Helix 33
AD6
A
208 230Right-handed alpha
Helix 34
AD7
A
232 245Right-handed alpha
Helix 35
AD8
A
249 266Right-handed alpha
Helix 36
AD9
A
277 288Right-handed alpha
Helix 37
AE1
A
290 295Right-handed alpha
Helix 38
AE2
A
301 310Right-handed alpha
Helix 39
AE3
A
321 334Right-handed alpha
Helix 40
AE4
A
340 349Right-handed alpha
Helix 41
AE5
A
354 358Right-handed 310
Helix 42
AE6
A
421 429Right-handed alpha
Helix 43
AE7
A
438 450Right-handed alpha
Helix 44
AE8
B
22 48Right-handed alpha
Helix 45
AE9
B
50 55Right-handed alpha
Helix 46
AF1
B
56 73Right-handed alpha
Helix 47
AF2
B
84 88Right-handed 310
Helix 48
AF3
B
113 124Right-handed alpha
Helix 49
AF4
B
129 148Right-handed alpha
Helix 50
AF5
B
150 157Right-handed alpha
Helix 51
AF6
B
160 167Right-handed 310
Helix 52
AF7
B
177 184Right-handed alpha
Helix 53
AF8
B
185 203Right-handed alpha
Helix 54
AF9
B
208 230Right-handed alpha
Helix 55
AG1
B
232 245Right-handed alpha
Helix 56
AG2
B
249 266Right-handed alpha
Helix 57
AG3
B
277 288Right-handed alpha
Helix 58
AG4
B
290 295Right-handed alpha
Helix 59
AG5
B
301 310Right-handed alpha
Helix 60
AG6
B
321 334Right-handed alpha
Helix 61
AG7
B
340 349Right-handed alpha
Helix 62
AG8
B
354 358Right-handed 310
Helix 63
AG9
B
421 429Right-handed alpha
Helix 64
AH1
B
438 450Right-handed alpha
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There are 12 sheets in PDB entry 8TWR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 92first strand
Strand 2
C
111 112anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 100first strand
Strand 2
C
103 108anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 316first strand
Strand 2
C
375 378anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
385 390first strand
Strand 2
C
460 465anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
111 112anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
103 108anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
375 378anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 390first strand
Strand 2
A
460 465anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
111 112anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 100first strand
Strand 2
B
103 108anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 316first strand
Strand 2
B
375 378anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 390first strand
Strand 2
B
460 465anti-parallel
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