Analysis of interatomic Contacts of Structural Units in PDB entry:
8TX5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TX5 entry

There are 4 chains in PDB entry 8TX5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	GLN 639
B	ALA 1	GLN 639
C	ALA 1	GLN 639
D	ALA 1	GLN 639

There are 24 helices in PDB entry 8TX5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	32	Right-handed 310
Helix 2	AA2	A	43	47	Right-handed 310
Helix 3	AA3	A	317	321	Right-handed 310
Helix 4	AA4	A	327	332	Right-handed alpha
Helix 5	AA5	A	341	343	Right-handed 310
Helix 6	AA6	A	530	534	Right-handed 310
Helix 7	AA7	B	26	32	Right-handed 310
Helix 8	AA8	B	43	47	Right-handed 310
Helix 9	AA9	B	317	321	Right-handed 310
Helix 10	AB1	B	327	332	Right-handed alpha
Helix 11	AB2	B	341	343	Right-handed 310
Helix 12	AB3	B	530	534	Right-handed 310
Helix 13	AB4	C	26	32	Right-handed 310
Helix 14	AB5	C	43	47	Right-handed 310
Helix 15	AB6	C	317	321	Right-handed 310
Helix 16	AB7	C	327	332	Right-handed alpha
Helix 17	AB8	C	341	343	Right-handed 310
Helix 18	AB9	C	530	534	Right-handed 310
Helix 19	AC1	D	26	32	Right-handed 310
Helix 20	AC2	D	43	47	Right-handed 310
Helix 21	AC3	D	317	321	Right-handed 310
Helix 22	AC4	D	327	332	Right-handed alpha
Helix 23	AC5	D	341	343	Right-handed 310
Helix 24	AC6	D	530	534	Right-handed 310

There are 48 sheets in PDB entry 8TX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	142	147	anti-parallel
Strand 3	A	53	71	anti-parallel
Strand 4	A	15	18	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	142	147	anti-parallel
Strand 3	A	53	71	anti-parallel
Strand 4	A	112	128	anti-parallel
Strand 5	A	84	90	anti-parallel
Strand 6	A	101	104	anti-parallel
Strand 7	A	160	166	parallel
Strand 8	A	524	529	anti-parallel
Strand 9	A	507	511	anti-parallel
Strand 10	A	497	501	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	139	140	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	219	first strand
Strand 2	A	202	207	anti-parallel
Strand 3	A	183	186	anti-parallel
Strand 4	A	173	176	anti-parallel
Strand 5	A	578	580	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	233	first strand
Strand 2	A	238	242	anti-parallel
Strand 3	A	250	254	anti-parallel
Strand 4	A	259	262	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	277	first strand
Strand 2	A	283	286	anti-parallel
Strand 3	A	299	303	anti-parallel
Strand 4	A	308	312	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	345	347	anti-parallel
Strand 3	A	353	358	anti-parallel
Strand 4	A	364	370	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	376	377	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	390	first strand
Strand 2	A	395	399	anti-parallel
Strand 3	A	414	418	anti-parallel
Strand 4	A	427	430	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	446	first strand
Strand 2	A	452	455	anti-parallel
Strand 3	A	474	477	anti-parallel
Strand 4	A	482	485	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	549	first strand
Strand 2	A	559	564	anti-parallel
Strand 3	A	601	605	anti-parallel
Strand 4	A	595	596	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	555	first strand
Strand 2	A	633	638	parallel
Strand 3	A	616	623	anti-parallel
Strand 4	A	570	575	anti-parallel
Strand 5	A	589	591	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	142	147	anti-parallel
Strand 3	B	53	71	anti-parallel
Strand 4	B	15	18	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	142	147	anti-parallel
Strand 3	B	53	71	anti-parallel
Strand 4	B	112	128	anti-parallel
Strand 5	B	84	90	anti-parallel
Strand 6	B	101	104	anti-parallel
Strand 7	B	160	166	parallel
Strand 8	B	524	529	anti-parallel
Strand 9	B	507	511	anti-parallel
Strand 10	B	497	501	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	139	140	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	219	first strand
Strand 2	B	202	207	anti-parallel
Strand 3	B	183	186	anti-parallel
Strand 4	B	173	176	anti-parallel
Strand 5	B	578	580	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	233	first strand
Strand 2	B	238	242	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	262	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	277	first strand
Strand 2	B	283	286	anti-parallel
Strand 3	B	299	303	anti-parallel
Strand 4	B	308	312	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	345	347	anti-parallel
Strand 3	B	353	358	anti-parallel
Strand 4	B	364	370	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	376	377	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	390	first strand
Strand 2	B	395	399	anti-parallel
Strand 3	B	414	418	anti-parallel
Strand 4	B	427	430	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	446	first strand
Strand 2	B	452	455	anti-parallel
Strand 3	B	474	477	anti-parallel
Strand 4	B	482	485	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	546	549	first strand
Strand 2	B	559	564	anti-parallel
Strand 3	B	601	605	anti-parallel
Strand 4	B	595	596	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	555	first strand
Strand 2	B	633	638	parallel
Strand 3	B	616	623	anti-parallel
Strand 4	B	570	575	anti-parallel
Strand 5	B	589	591	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	142	147	anti-parallel
Strand 3	C	53	71	anti-parallel
Strand 4	C	15	18	anti-parallel

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There are 10 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	142	147	anti-parallel
Strand 3	C	53	71	anti-parallel
Strand 4	C	112	128	anti-parallel
Strand 5	C	84	90	anti-parallel
Strand 6	C	101	104	anti-parallel
Strand 7	C	160	166	parallel
Strand 8	C	524	529	anti-parallel
Strand 9	C	507	511	anti-parallel
Strand 10	C	497	501	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	139	140	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	219	first strand
Strand 2	C	202	207	anti-parallel
Strand 3	C	183	186	anti-parallel
Strand 4	C	173	176	anti-parallel
Strand 5	C	578	580	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	233	first strand
Strand 2	C	238	242	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	259	262	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	277	first strand
Strand 2	C	283	286	anti-parallel
Strand 3	C	299	303	anti-parallel
Strand 4	C	308	312	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	339	first strand
Strand 2	C	345	347	anti-parallel
Strand 3	C	353	358	anti-parallel
Strand 4	C	364	370	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	373	first strand
Strand 2	C	376	377	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	390	first strand
Strand 2	C	395	399	anti-parallel
Strand 3	C	414	418	anti-parallel
Strand 4	C	427	430	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	443	446	first strand
Strand 2	C	452	455	anti-parallel
Strand 3	C	474	477	anti-parallel
Strand 4	C	482	485	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	546	549	first strand
Strand 2	C	559	564	anti-parallel
Strand 3	C	601	605	anti-parallel
Strand 4	C	595	598	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	553	555	first strand
Strand 2	C	633	638	parallel
Strand 3	C	616	623	anti-parallel
Strand 4	C	570	575	anti-parallel
Strand 5	C	588	592	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	142	147	anti-parallel
Strand 3	D	53	71	anti-parallel
Strand 4	D	15	18	anti-parallel

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There are 10 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	142	147	anti-parallel
Strand 3	D	53	71	anti-parallel
Strand 4	D	112	128	anti-parallel
Strand 5	D	84	90	anti-parallel
Strand 6	D	101	104	anti-parallel
Strand 7	D	160	166	parallel
Strand 8	D	524	529	anti-parallel
Strand 9	D	507	511	anti-parallel
Strand 10	D	497	501	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	139	140	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	219	first strand
Strand 2	D	202	207	anti-parallel
Strand 3	D	183	186	anti-parallel
Strand 4	D	173	176	anti-parallel
Strand 5	D	578	580	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	233	first strand
Strand 2	D	238	242	anti-parallel
Strand 3	D	250	254	anti-parallel
Strand 4	D	259	262	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	277	first strand
Strand 2	D	283	286	anti-parallel
Strand 3	D	299	303	anti-parallel
Strand 4	D	308	312	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	339	first strand
Strand 2	D	345	347	anti-parallel
Strand 3	D	353	358	anti-parallel
Strand 4	D	364	370	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	373	first strand
Strand 2	D	376	377	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	390	first strand
Strand 2	D	395	399	anti-parallel
Strand 3	D	414	418	anti-parallel
Strand 4	D	427	430	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	446	first strand
Strand 2	D	452	455	anti-parallel
Strand 3	D	474	477	anti-parallel
Strand 4	D	482	485	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	546	549	first strand
Strand 2	D	559	564	anti-parallel
Strand 3	D	601	605	anti-parallel
Strand 4	D	595	598	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	553	555	first strand
Strand 2	D	633	638	parallel
Strand 3	D	616	623	anti-parallel
Strand 4	D	570	575	anti-parallel
Strand 5	D	589	592	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TX5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TX5