Analysis of interatomic Contacts of Structural Units in PDB entry:
8TXO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TXO entry

There are 8 chains in PDB entry 8TXO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 19	ASP 233
G	THR 6	LEU 234
I	MET 1	GLU 1342
J	GLU 16	ARG 1373
N	T 1	A 9
R	A 1	G 9
T	T 10	A 18
T	C 20	T 28

There are 89 helices in PDB entry 8TXO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	77	88	Right-handed alpha
Helix 3	AA3	A	113	115	Right-handed 310
Helix 4	AA4	A	154	159	Right-handed alpha
Helix 5	AA5	A	212	228	Right-handed alpha
Helix 6	AA6	A	229	232	Right-handed 310
Helix 7	AA7	G	34	51	Right-handed alpha
Helix 8	AA8	G	77	87	Right-handed alpha
Helix 9	AA9	G	113	115	Right-handed 310
Helix 10	AB1	G	212	233	Right-handed alpha
Helix 11	AB2	I	4	10	Right-handed alpha
Helix 12	AB3	I	28	40	Right-handed alpha
Helix 13	AB4	I	47	57	Right-handed alpha
Helix 14	AB5	I	81	89	Right-handed alpha
Helix 15	AB6	I	398	409	Right-handed alpha
Helix 16	AB7	I	424	434	Right-handed alpha
Helix 17	AB8	I	447	449	Right-handed 310
Helix 18	AB9	I	455	480	Right-handed alpha
Helix 19	AC1	I	488	493	Right-handed alpha
Helix 20	AC2	I	495	509	Right-handed alpha
Helix 21	AC3	I	519	528	Right-handed alpha
Helix 22	AC4	I	544	549	Right-handed alpha
Helix 23	AC5	I	551	555	Right-handed 310
Helix 24	AC6	I	608	614	Right-handed alpha
Helix 25	AC7	I	664	668	Right-handed 310
Helix 26	AC8	I	670	674	Right-handed 310
Helix 27	AC9	I	675	686	Right-handed alpha
Helix 28	AD1	I	704	713	Right-handed alpha
Helix 29	AD2	I	820	825	Right-handed alpha
Helix 30	AD3	I	858	865	Right-handed alpha
Helix 31	AD4	I	942	977	Right-handed alpha
Helix 32	AD5	I	1018	1038	Right-handed alpha
Helix 33	AD6	I	1101	1106	Right-handed alpha
Helix 34	AD7	I	1109	1134	Right-handed alpha
Helix 35	AD8	I	1137	1151	Right-handed alpha
Helix 36	AD9	I	1165	1176	Right-handed alpha
Helix 37	AE1	I	1191	1202	Right-handed alpha
Helix 38	AE2	I	1238	1243	Right-handed alpha
Helix 39	AE3	I	1271	1282	Right-handed alpha
Helix 40	AE4	I	1283	1292	Right-handed alpha
Helix 41	AE5	I	1297	1311	Right-handed alpha
Helix 42	AE6	I	1320	1332	Right-handed alpha
Helix 43	AE7	J	26	33	Right-handed alpha
Helix 44	AE8	J	58	63	Right-handed alpha
Helix 45	AE9	J	113	118	Right-handed alpha
Helix 46	AF1	J	122	128	Right-handed alpha
Helix 47	AF2	J	131	142	Right-handed alpha
Helix 48	AF3	J	182	192	Right-handed alpha
Helix 49	AF4	J	193	207	Right-handed alpha
Helix 50	AF5	J	210	231	Right-handed alpha
Helix 51	AF6	J	246	250	Right-handed 310
Helix 52	AF7	J	263	285	Right-handed alpha
Helix 53	AF8	J	288	308	Right-handed alpha
Helix 54	AF9	J	327	331	Right-handed 310
Helix 55	AG1	J	336	342	Right-handed alpha
Helix 56	AG2	J	370	377	Right-handed alpha
Helix 57	AG3	J	377	383	Right-handed alpha
Helix 58	AG4	J	430	432	Right-handed 310
Helix 59	AG5	J	453	458	Right-handed alpha
Helix 60	AG6	J	473	484	Right-handed alpha
Helix 61	AG7	J	504	515	Right-handed alpha
Helix 62	AG8	J	529	539	Right-handed alpha
Helix 63	AG9	J	574	580	Right-handed alpha
Helix 64	AH1	J	588	592	Right-handed 310
Helix 65	AH2	J	597	612	Right-handed alpha
Helix 66	AH3	J	613	636	Right-handed alpha
Helix 67	AH4	J	640	644	Right-handed 310
Helix 68	AH5	J	649	665	Right-handed alpha
Helix 69	AH6	J	674	703	Right-handed alpha
Helix 70	AH7	J	720	729	Right-handed alpha
Helix 71	AH8	J	733	742	Right-handed alpha
Helix 72	AH9	J	768	788	Right-handed alpha
Helix 73	AI1	J	789	805	Right-handed alpha
Helix 74	AI2	J	834	840	Right-handed alpha
Helix 75	AI3	J	865	875	Right-handed alpha
Helix 76	AI4	J	896	900	Right-handed alpha
Helix 77	AI5	J	914	933	Right-handed alpha
Helix 78	AI6	J	934	937	Right-handed 310
Helix 79	AI7	J	1137	1146	Right-handed alpha
Helix 80	AI8	J	1216	1225	Right-handed alpha
Helix 81	AI9	J	1225	1244	Right-handed alpha
Helix 82	AJ1	J	1249	1261	Right-handed alpha
Helix 83	AJ2	J	1282	1296	Right-handed alpha
Helix 84	AJ3	J	1308	1315	Right-handed alpha
Helix 85	AJ4	J	1318	1326	Right-handed alpha
Helix 86	AJ5	J	1327	1339	Right-handed alpha
Helix 87	AJ6	J	1346	1353	Right-handed alpha
Helix 88	AJ7	J	1359	1361	Right-handed 310
Helix 89	AJ8	J	1362	1372	Right-handed alpha

There are 39 sheets in PDB entry 8TXO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	199	207	anti-parallel
Strand 3	A	27	31	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	199	207	anti-parallel
Strand 3	A	180	189	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	103	first strand
Strand 2	A	141	150	anti-parallel
Strand 3	A	52	61	anti-parallel
Strand 4	A	171	172	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	129	132	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	18	first strand
Strand 2	G	23	31	anti-parallel
Strand 3	G	199	207	anti-parallel
Strand 4	G	180	189	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	105	first strand
Strand 2	G	139	150	anti-parallel
Strand 3	G	52	61	anti-parallel
Strand 4	G	170	172	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	91	first strand
Strand 2	G	122	123	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	111	first strand
Strand 2	G	129	133	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	153	first strand
Strand 2	G	175	176	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	14	first strand
Strand 2	I	1182	1183	parallel
Strand 3	I	700	701	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	68	75	first strand
Strand 2	I	93	105	anti-parallel
Strand 3	I	114	128	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	138	first strand
Strand 2	I	141	145	anti-parallel
Strand 3	I	512	514	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	451	454	first strand
Strand 2	I	147	151	anti-parallel
Strand 3	I	529	531	parallel
Strand 4	I	572	574	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	595	anti-parallel
Strand 3	I	598	607	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	595	anti-parallel
Strand 3	I	652	654	anti-parallel
Strand 4	I	616	617	parallel
Strand 5	I	633	638	anti-parallel
Strand 6	I	641	646	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	748	752	first strand
Strand 2	I	731	736	anti-parallel
Strand 3	I	722	727	anti-parallel
Strand 4	I	776	777	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	757	758	first strand
Strand 2	I	764	765	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	768	769	first strand
Strand 2	I	784	785	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	789	790	first strand
Strand 2	I	793	794	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1209	1210	first strand
Strand 2	I	1225	1234	anti-parallel
Strand 3	I	1065	1067	anti-parallel
Strand 4	I	1073	1080	anti-parallel
Strand 5	I	816	819	parallel
Strand 6	I	1096	1098	anti-parallel
Strand 7	I	798	804	parallel
Strand 8	I	1225	1234	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	830	841	first strand
Strand 2	I	1046	1058	anti-parallel
Strand 3	I	926	935	anti-parallel
Strand 4	I	876	877	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	882	884	first strand
Strand 2	I	918	919	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	357	anti-parallel
Strand 3	J	465	469	anti-parallel
Strand 4	J	421	425	anti-parallel
Strand 5	J	434	442	anti-parallel
Strand 6	J	365	369	parallel
Strand 7	J	447	449	anti-parallel
Strand 8	J	350	357	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1268	1270	first strand
Strand 2	J	345	347	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1335	1340	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	1341	1342	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	36	first strand
Strand 2	J	102	112	parallel
Strand 3	J	238	244	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	526	527	first strand
Strand 2	J	547	557	parallel
Strand 3	J	563	573	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	706	708	first strand
Strand 2	J	713	715	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	809	811	first strand
Strand 2	J	894	895	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	820	821	first strand
Strand 2	J	881	882	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	848	849	first strand
Strand 2	J	856	858	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	949	951	first strand
Strand 2	J	1016	1019	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	957	961	first strand
Strand 2	J	980	985	anti-parallel
Strand 3	J	995	997	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	965	967	first strand
Strand 2	J	973	975	anti-parallel
Strand 3	J	1002	1003	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1154	1155	first strand
Strand 2	J	1209	1211	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1161	1163	first strand
Strand 2	J	1173	1179	anti-parallel
Strand 3	J	1186	1190	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1279	1281	first strand
Strand 2	J	1263	1265	anti-parallel
Strand 3	J	1303	1305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TXO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TXO