Analysis of interatomic Contacts of Structural Units in PDB entry:
8TXR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TXR entry

There are 20 chains in PDB entry 8TXR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 9VAL 448
C
 ALA 8VAL 448
i
 PRO 8GLU 68
c
 PRO 8SER 65
g
 PRO 8SER 65
h
 ALA 9ASN 67
a
 ALA 9GLN 55
b
 ALA 7ASP 69
B
 ALA 8PRO 308
o
 SER 10LEU 63
p
 PRO 8ASN 67
D
 ALA 8PRO 308
m
 SER 10GLU 68
n
 SER 10GLU 68
j
 PRO 8ASP 66
k
 PRO 8ASN 67
l
 ALA 9ASN 67
d
 PRO 8ASN 67
e
 PRO 8GLU 68
f
 ALA 9ASN 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 8TXR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 27Right-handed alpha
Helix 2
AA2
A
63 68Right-handed alpha
Helix 3
AA3
A
110 125Right-handed alpha
Helix 4
AA4
A
128 132Right-handed 310
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
180 196Right-handed alpha
Helix 7
AA7
A
209 217Right-handed 310
Helix 8
AA8
A
218 228Right-handed alpha
Helix 9
AA9
A
243 249Right-handed alpha
Helix 10
AB1
A
255 264Right-handed alpha
Helix 11
AB2
A
266 306Right-handed alpha
Helix 12
AB3
A
308 350Right-handed alpha
Helix 13
AB4
A
353 396Right-handed alpha
Helix 14
AB5
C
12 27Right-handed alpha
Helix 15
AB6
C
63 68Right-handed alpha
Helix 16
AB7
C
110 125Right-handed alpha
Helix 17
AB8
C
150 164Right-handed alpha
Helix 18
AB9
C
179 196Right-handed alpha
Helix 19
AC1
C
211 217Right-handed 310
Helix 20
AC2
C
218 228Right-handed alpha
Helix 21
AC3
C
243 249Right-handed alpha
Helix 22
AC4
C
255 264Right-handed alpha
Helix 23
AC5
C
266 305Right-handed alpha
Helix 24
AC6
C
308 351Right-handed alpha
Helix 25
AC7
C
353 395Right-handed alpha
Helix 26
AC8
C
419 423Right-handed 310
Helix 27
AC9
i
10 28Right-handed alpha
Helix 28
AD1
i
31 65Right-handed alpha
Helix 29
AD2
c
10 27Right-handed alpha
Helix 30
AD3
c
31 34Right-handed 310
Helix 31
AD4
c
35 60Right-handed alpha
Helix 32
AD5
c
61 65Right-handed 310
Helix 33
AD6
g
10 28Right-handed alpha
Helix 34
AD7
g
31 54Right-handed alpha
Helix 35
AD8
h
10 28Right-handed alpha
Helix 36
AD9
h
31 65Right-handed alpha
Helix 37
AE1
a
10 27Right-handed alpha
Helix 38
AE2
a
31 55Right-handed alpha
Helix 39
AE3
b
10 26Right-handed alpha
Helix 40
AE4
b
31 65Right-handed alpha
Helix 41
AE5
B
12 28Right-handed alpha
Helix 42
AE6
B
63 68Right-handed alpha
Helix 43
AE7
B
110 125Right-handed alpha
Helix 44
AE8
B
150 164Right-handed alpha
Helix 45
AE9
B
180 196Right-handed alpha
Helix 46
AF1
B
209 214Right-handed alpha
Helix 47
AF2
B
215 217Right-handed 310
Helix 48
AF3
B
218 226Right-handed alpha
Helix 49
AF4
B
243 249Right-handed alpha
Helix 50
AF5
B
255 264Right-handed alpha
Helix 51
AF6
B
266 306Right-handed alpha
Helix 52
AF7
o
11 26Right-handed alpha
Helix 53
AF8
o
31 56Right-handed alpha
Helix 54
AF9
p
10 27Right-handed alpha
Helix 55
AG1
p
35 65Right-handed alpha
Helix 56
AG2
D
12 28Right-handed alpha
Helix 57
AG3
D
63 68Right-handed alpha
Helix 58
AG4
D
110 125Right-handed alpha
Helix 59
AG5
D
128 132Right-handed 310
Helix 60
AG6
D
150 163Right-handed alpha
Helix 61
AG7
D
180 196Right-handed alpha
Helix 62
AG8
D
209 217Right-handed alpha
Helix 63
AG9
D
218 228Right-handed alpha
Helix 64
AH1
D
243 249Right-handed alpha
Helix 65
AH2
D
255 264Right-handed alpha
Helix 66
AH3
D
266 306Right-handed alpha
Helix 67
AH4
m
11 28Right-handed alpha
Helix 68
AH5
m
31 59Right-handed alpha
Helix 69
AH6
n
11 28Right-handed alpha
Helix 70
AH7
n
31 64Right-handed alpha
Helix 71
AH8
j
10 27Right-handed alpha
Helix 72
AH9
j
31 65Right-handed alpha
Helix 73
AI1
k
10 27Right-handed alpha
Helix 74
AI2
k
31 65Right-handed alpha
Helix 75
AI3
l
10 28Right-handed alpha
Helix 76
AI4
l
31 65Right-handed alpha
Helix 77
AI5
d
10 26Right-handed alpha
Helix 78
AI6
d
31 65Right-handed alpha
Helix 79
AI7
e
10 27Right-handed alpha
Helix 80
AI8
e
31 65Right-handed alpha
Helix 81
AI9
f
10 27Right-handed alpha
Helix 82
AJ1
f
31 65Right-handed alpha
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There are 10 sheets in PDB entry 8TXR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
C
29 40parallel
Strand 3
C
79 89anti-parallel
Strand 4
C
94 103anti-parallel
Strand 5
C
57 62parallel
Strand 6
C
47 52anti-parallel
Strand 7
C
29 40anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 11first strand
Strand 2
A
30 40parallel
Strand 3
A
79 89anti-parallel
Strand 4
A
94 103anti-parallel
Strand 5
A
57 62parallel
Strand 6
A
47 52anti-parallel
Strand 7
A
30 40anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
232 236parallel
Strand 3
A
200 205parallel
Strand 4
A
142 145parallel
Strand 5
A
169 172parallel
Strand 6
g
60 62parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
428 432anti-parallel
Strand 3
A
436 447anti-parallel
Strand 4
C
436 441anti-parallel
Strand 5
C
428 432anti-parallel
Strand 6
C
408 410anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
428 432anti-parallel
Strand 3
A
436 447anti-parallel
Strand 4
C
444 447anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 173first strand
Strand 2
C
142 146parallel
Strand 3
C
200 203parallel
Strand 4
C
232 234parallel
Strand 5
C
251 252parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
D
29 40parallel
Strand 3
D
79 89anti-parallel
Strand 4
D
94 103anti-parallel
Strand 5
D
56 62parallel
Strand 6
D
47 53anti-parallel
Strand 7
D
29 40anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 11first strand
Strand 2
B
29 40parallel
Strand 3
B
79 89anti-parallel
Strand 4
B
94 103anti-parallel
Strand 5
B
57 62parallel
Strand 6
B
47 52anti-parallel
Strand 7
B
29 40anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
232 236parallel
Strand 3
B
200 205parallel
Strand 4
B
142 146parallel
Strand 5
B
169 173parallel
Strand 6
o
60 62parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
169 173first strand
Strand 2
D
142 146parallel
Strand 3
D
200 203parallel
Strand 4
D
232 234parallel
Strand 5
D
251 252parallel
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