Analysis of interatomic Contacts of Structural Units in PDB entry:
8TY1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TY1 entry

There are 3 chains in PDB entry 8TY1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	GLN 2329
B	ILE 2	ARG 213
C	GLN 1	VAL 235

There are 26 helices in PDB entry 8TY1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	120	128	Right-handed 310
Helix 2	AA2	A	164	171	Right-handed alpha
Helix 3	AA3	A	191	195	Right-handed 310
Helix 4	AA4	A	408	413	Right-handed alpha
Helix 5	AA5	A	538	546	Right-handed alpha
Helix 6	AA6	A	586	595	Right-handed alpha
Helix 7	AA7	A	605	612	Right-handed alpha
Helix 8	AA8	A	694	700	Right-handed alpha
Helix 9	AA9	A	1750	1755	Right-handed 310
Helix 10	AB1	A	1820	1824	Right-handed 310
Helix 11	AB2	A	1842	1847	Right-handed alpha
Helix 12	AB3	A	1886	1888	Right-handed 310
Helix 13	AB4	A	1891	1895	Right-handed 310
Helix 14	AB5	A	1912	1915	Right-handed 310
Helix 15	AB6	A	2002	2007	Right-handed alpha
Helix 16	AB7	A	2047	2051	Right-handed 310
Helix 17	AB8	A	2186	2190	Right-handed 310
Helix 18	AB9	A	2204	2208	Right-handed 310
Helix 19	AC1	B	30	32	Right-handed 310
Helix 20	AC2	B	93	97	Right-handed 310
Helix 21	AC3	B	123	130	Right-handed alpha
Helix 22	AC4	B	184	191	Right-handed alpha
Helix 23	AC5	C	72	75	Right-handed 310
Helix 24	AC6	C	97	101	Right-handed 310
Helix 25	AC7	C	151	155	Right-handed 310
Helix 26	AC8	C	178	182	Right-handed 310

There are 33 sheets in PDB entry 8TY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	3	13	anti-parallel
Strand 3	A	90	91	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	3	13	anti-parallel
Strand 3	A	85	87	parallel
Strand 4	A	137	139	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	176	180	parallel
Strand 3	A	154	157	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	198	first strand
Strand 2	A	253	259	parallel
Strand 3	A	294	300	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	232	235	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	248	first strand
Strand 2	A	323	327	parallel
Strand 3	A	305	311	anti-parallel
Strand 4	A	270	272	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	429	first strand
Strand 2	A	383	394	anti-parallel
Strand 3	A	462	467	parallel
Strand 4	A	508	514	anti-parallel
Strand 5	A	482	485	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	477	first strand
Strand 2	A	529	534	anti-parallel
Strand 3	A	549	553	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	613	617	first strand
Strand 2	A	574	580	anti-parallel
Strand 3	A	635	640	parallel
Strand 4	A	675	680	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	659	first strand
Strand 2	A	664	665	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1695	1697	first strand
Strand 2	A	1770	1772	parallel
Strand 3	A	1817	1818	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1701	1707	first strand
Strand 2	A	1730	1736	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1763	1765	first strand
Strand 2	A	1852	1858	parallel
Strand 3	A	1832	1838	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1917	1921	first strand
Strand 2	A	1874	1884	anti-parallel
Strand 3	A	1940	1946	parallel
Strand 4	A	1983	1987	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1933	1935	first strand
Strand 2	A	2015	2017	parallel
Strand 3	A	1994	1995	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1975	1976	first strand
Strand 2	A	1956	1958	anti-parallel
Strand 3	A	1998	1999	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1963	1965	first strand
Strand 2	A	1971	1973	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2062	2064	first strand
Strand 2	A	2160	2169	anti-parallel
Strand 3	A	2071	2087	anti-parallel
Strand 4	A	2144	2157	anti-parallel
Strand 5	A	2094	2106	anti-parallel
Strand 6	A	2113	2114	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2089	2091	first strand
Strand 2	A	2094	2106	anti-parallel
Strand 3	A	2126	2127	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2191	2192	first strand
Strand 2	A	2230	2233	anti-parallel
Strand 3	A	2305	2310	anti-parallel
Strand 4	A	2260	2265	anti-parallel
Strand 5	A	2272	2273	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2293	2296	first strand
Strand 2	A	2239	2246	anti-parallel
Strand 3	A	2320	2326	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2248	2250	first strand
Strand 2	A	2253	2257	anti-parallel
Strand 3	A	2313	2314	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	19	29	anti-parallel
Strand 3	B	63	76	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	104	107	parallel
Strand 3	B	86	91	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	50	anti-parallel
Strand 6	B	54	55	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	104	107	parallel
Strand 3	B	86	91	anti-parallel
Strand 4	B	99	100	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	135	139	anti-parallel
Strand 3	B	176	181	anti-parallel
Strand 4	B	161	165	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	156	157	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	88	93	anti-parallel
Strand 4	C	78	82	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	131	135	parallel
Strand 3	C	102	109	anti-parallel
Strand 4	C	40	49	anti-parallel
Strand 5	C	56	61	anti-parallel
Strand 6	C	68	70	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	131	135	parallel
Strand 3	C	102	109	anti-parallel
Strand 4	C	124	127	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	162	169	anti-parallel
Strand 3	C	200	206	anti-parallel
Strand 4	C	187	189	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	162	169	anti-parallel
Strand 3	C	200	206	anti-parallel
Strand 4	C	193	194	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	177	first strand
Strand 2	C	219	224	anti-parallel
Strand 3	C	229	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TY1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TY1