Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TYE entry

There are 8 chains in PDB entry 8TYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	UNK 1	UNK 109
L	UNK 1	UNK 105
C	SER 60	LEU 259
A	SER 60	LEU 259
B	SER 60	LEU 259
c	GLY 260	MET 414
a	GLY 260	MET 414
b	GLY 260	MET 414

There are 37 helices in PDB entry 8TYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	69	73	Right-handed 310
Helix 2	AA2	L	50	52	Right-handed 310
Helix 3	AA3	C	75	80	Right-handed 310
Helix 4	AA4	C	119	127	Right-handed alpha
Helix 5	AA5	C	130	143	Right-handed alpha
Helix 6	AA6	C	157	161	Right-handed 310
Helix 7	AA7	C	182	195	Right-handed alpha
Helix 8	AA8	C	238	247	Right-handed alpha
Helix 9	AA9	A	74	80	Right-handed 310
Helix 10	AB1	A	119	127	Right-handed alpha
Helix 11	AB2	A	130	143	Right-handed alpha
Helix 12	AB3	A	157	161	Right-handed 310
Helix 13	AB4	A	182	195	Right-handed alpha
Helix 14	AB5	A	238	245	Right-handed alpha
Helix 15	AB6	A	246	249	Right-handed 310
Helix 16	AB7	B	74	81	Right-handed 310
Helix 17	AB8	B	119	127	Right-handed alpha
Helix 18	AB9	B	130	143	Right-handed alpha
Helix 19	AC1	B	157	161	Right-handed 310
Helix 20	AC2	B	182	195	Right-handed alpha
Helix 21	AC3	B	238	246	Right-handed alpha
Helix 22	AC4	c	294	301	Right-handed alpha
Helix 23	AC5	c	307	325	Right-handed alpha
Helix 24	AC6	c	334	345	Right-handed alpha
Helix 25	AC7	c	346	359	Right-handed alpha
Helix 26	AC8	c	399	414	Right-handed alpha
Helix 27	AC9	a	294	302	Right-handed alpha
Helix 28	AD1	a	308	326	Right-handed alpha
Helix 29	AD2	a	334	339	Right-handed alpha
Helix 30	AD3	a	346	359	Right-handed alpha
Helix 31	AD4	a	399	413	Right-handed alpha
Helix 32	AD5	b	294	304	Right-handed alpha
Helix 33	AD6	b	307	326	Right-handed alpha
Helix 34	AD7	b	334	340	Right-handed alpha
Helix 35	AD8	b	346	359	Right-handed alpha
Helix 36	AD9	b	396	398	Right-handed 310
Helix 37	AE1	b	399	414	Right-handed alpha

There are 14 sheets in PDB entry 8TYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	38	first strand
Strand 2	H	89	92	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	68	first strand
Strand 2	H	76	79	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	35	37	first strand
Strand 2	L	86	88	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	49	first strand
Strand 2	L	53	54	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	66	72	anti-parallel
Strand 3	c	368	374	anti-parallel
Strand 4	c	384	385	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	95	96	anti-parallel
Strand 3	C	102	108	anti-parallel
Strand 4	C	219	225	anti-parallel
Strand 5	C	163	167	anti-parallel
Strand 6	C	153	156	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	72	first strand
Strand 2	a	363	374	anti-parallel
Strand 3	a	384	389	anti-parallel
Strand 4	a	392	393	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	86	first strand
Strand 2	A	93	96	anti-parallel
Strand 3	A	102	108	anti-parallel
Strand 4	A	219	225	anti-parallel
Strand 5	A	163	167	anti-parallel
Strand 6	A	153	156	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	66	72	anti-parallel
Strand 3	b	368	374	anti-parallel
Strand 4	b	384	385	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	219	225	anti-parallel
Strand 5	B	163	167	anti-parallel
Strand 6	B	153	156	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	278	280	first strand
Strand 2	c	291	293	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	388	389	first strand
Strand 2	c	392	393	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	278	280	first strand
Strand 2	b	291	293	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	388	389	first strand
Strand 2	b	392	393	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYE