Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TYH entry

There is 1 chain in PDB entry 8TYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 198ALA 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8TYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
246 251Right-handed alpha
Helix 2
AA2
A
256 260Right-handed 310
Helix 3
AA3
A
317 321Right-handed 310
Helix 4
AA4
A
332 336Right-handed 310
Helix 5
AA5
A
342 350Right-handed alpha
Helix 6
AA6
A
430 441Right-handed alpha
Helix 7
AA7
A
450 455Right-handed alpha
Helix 8
AA8
A
473 477Right-handed alpha
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There are 7 sheets in PDB entry 8TYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
370 373anti-parallel
Strand 3
A
357 361anti-parallel
Strand 4
A
513 518anti-parallel
Strand 5
A
527 533anti-parallel
Strand 6
A
381 392anti-parallel
Strand 7
A
397 400anti-parallel
Strand 8
A
416 420anti-parallel
Strand 9
A
502 504parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
213 214anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
217 219anti-parallel
Strand 3
A
279 292anti-parallel
Strand 4
A
264 265anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 231first strand
Strand 2
A
326 329parallel
Strand 3
A
237 240anti-parallel
Strand 4
A
295 307parallel
Strand 5
A
279 292anti-parallel
Strand 6
A
272 276anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
402 405anti-parallel
Strand 3
A
461 465anti-parallel
Strand 4
A
468 472anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
489 490parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
484 487anti-parallel
Strand 3
A
478 480anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il