Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TYN entry

There are 4 chains in PDB entry 8TYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
c
 MET 1THR 747
f
 LEU 9THR 748
C
 MET 1THR 747
F
 LEU 9THR 748
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are107 helices in PDB entry 8TYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
c
9 23Right-handed alpha
Helix 2
AA2
c
43 53Right-handed alpha
Helix 3
AA3
c
93 110Right-handed alpha
Helix 4
AA4
c
151 165Right-handed alpha
Helix 5
AA5
c
180 183Right-handed 310
Helix 6
AA6
c
184 194Right-handed alpha
Helix 7
AA7
c
206 210Right-handed 310
Helix 8
AA8
c
216 221Right-handed alpha
Helix 9
AA9
c
238 245Right-handed alpha
Helix 10
AB1
c
247 262Right-handed alpha
Helix 11
AB2
c
265 269Right-handed 310
Helix 12
AB3
c
273 291Right-handed alpha
Helix 13
AB4
c
292 315Right-handed alpha
Helix 14
AB5
c
321 346Right-handed alpha
Helix 15
AB6
c
358 374Right-handed alpha
Helix 16
AB7
c
380 397Right-handed alpha
Helix 17
AB8
c
406 418Right-handed alpha
Helix 18
AB9
c
420 443Right-handed alpha
Helix 19
AC1
c
444 447Right-handed 310
Helix 20
AC2
c
452 467Right-handed alpha
Helix 21
AC3
c
467 485Right-handed alpha
Helix 22
AC4
c
532 536Right-handed 310
Helix 23
AC5
c
609 624Right-handed alpha
Helix 24
AC6
c
654 689Right-handed alpha
Helix 25
AC7
c
689 700Right-handed alpha
Helix 26
AC8
c
700 708Right-handed alpha
Helix 27
AC9
c
710 715Right-handed alpha
Helix 28
AD1
c
718 747Right-handed alpha
Helix 29
AD2
f
11 24Right-handed alpha
Helix 30
AD3
f
43 53Right-handed alpha
Helix 31
AD4
f
93 110Right-handed alpha
Helix 32
AD5
f
151 161Right-handed alpha
Helix 33
AD6
f
180 183Right-handed 310
Helix 34
AD7
f
184 194Right-handed alpha
Helix 35
AD8
f
206 210Right-handed 310
Helix 36
AD9
f
216 221Right-handed alpha
Helix 37
AE1
f
238 244Right-handed alpha
Helix 38
AE2
f
247 262Right-handed alpha
Helix 39
AE3
f
263 272Right-handed 310
Helix 40
AE4
f
273 287Right-handed alpha
Helix 41
AE5
f
292 315Right-handed alpha
Helix 42
AE6
f
321 346Right-handed alpha
Helix 43
AE7
f
360 368Right-handed alpha
Helix 44
AE8
f
369 374Right-handed alpha
Helix 45
AE9
f
380 397Right-handed alpha
Helix 46
AF1
f
406 418Right-handed alpha
Helix 47
AF2
f
420 447Right-handed alpha
Helix 48
AF3
f
449 485Right-handed alpha
Helix 49
AF4
f
600 602Right-handed 310
Helix 50
AF5
f
609 624Right-handed alpha
Helix 51
AF6
f
652 689Right-handed alpha
Helix 52
AF7
f
689 706Right-handed alpha
Helix 53
AF8
f
718 748Right-handed alpha
Helix 54
AF9
C
9 23Right-handed alpha
Helix 55
AG1
C
43 53Right-handed alpha
Helix 56
AG2
C
93 110Right-handed alpha
Helix 57
AG3
C
151 165Right-handed alpha
Helix 58
AG4
C
180 183Right-handed 310
Helix 59
AG5
C
184 194Right-handed alpha
Helix 60
AG6
C
206 210Right-handed 310
Helix 61
AG7
C
216 221Right-handed alpha
Helix 62
AG8
C
238 244Right-handed alpha
Helix 63
AG9
C
247 262Right-handed alpha
Helix 64
AH1
C
265 269Right-handed 310
Helix 65
AH2
C
273 291Right-handed alpha
Helix 66
AH3
C
292 315Right-handed alpha
Helix 67
AH4
C
321 346Right-handed alpha
Helix 68
AH5
C
358 374Right-handed alpha
Helix 69
AH6
C
380 397Right-handed alpha
Helix 70
AH7
C
406 418Right-handed alpha
Helix 71
AH8
C
420 443Right-handed alpha
Helix 72
AH9
C
444 447Right-handed 310
Helix 73
AI1
C
452 467Right-handed alpha
Helix 74
AI2
C
467 485Right-handed alpha
Helix 75
AI3
C
532 536Right-handed 310
Helix 76
AI4
C
609 624Right-handed alpha
Helix 77
AI5
C
654 689Right-handed alpha
Helix 78
AI6
C
689 700Right-handed alpha
Helix 79
AI7
C
700 708Right-handed alpha
Helix 80
AI8
C
710 715Right-handed alpha
Helix 81
AI9
C
718 747Right-handed alpha
Helix 82
AJ1
F
11 24Right-handed alpha
Helix 83
AJ2
F
43 53Right-handed alpha
Helix 84
AJ3
F
93 110Right-handed alpha
Helix 85
AJ4
F
151 161Right-handed alpha
Helix 86
AJ5
F
180 183Right-handed 310
Helix 87
AJ6
F
184 194Right-handed alpha
Helix 88
AJ7
F
206 210Right-handed 310
Helix 89
AJ8
F
216 221Right-handed alpha
Helix 90
AJ9
F
238 244Right-handed alpha
Helix 91
AK1
F
247 262Right-handed alpha
Helix 92
AK2
F
263 272Right-handed 310
Helix 93
AK3
F
273 287Right-handed alpha
Helix 94
AK4
F
292 315Right-handed alpha
Helix 95
AK5
F
321 346Right-handed alpha
Helix 96
AK6
F
358 361Right-handed 310
Helix 97
AK7
F
362 368Right-handed alpha
Helix 98
AK8
F
369 374Right-handed alpha
Helix 99
AK9
F
380 397Right-handed alpha
Helix 100
AL1
F
406 418Right-handed alpha
Helix 101
AL2
F
420 447Right-handed alpha
Helix 102
AL3
F
449 485Right-handed alpha
Helix 103
AL4
F
600 602Right-handed 310
Helix 104
AL5
F
609 624Right-handed alpha
Helix 105
AL6
F
652 689Right-handed alpha
Helix 106
AL7
F
689 707Right-handed alpha
Helix 107
AL8
F
718 748Right-handed alpha
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There are 8 sheets in PDB entry 8TYN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
80 83first strand
Strand 2
c
120 126anti-parallel
Strand 3
c
69 75parallel
Strand 4
c
132 136anti-parallel
Strand 5
c
33 38parallel
Strand 6
c
169 176parallel
Strand 7
c
201 205parallel
Strand 8
c
231 233parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
563 566first strand
Strand 2
c
549 553anti-parallel
Strand 3
c
539 545anti-parallel
Strand 4
c
522 528anti-parallel
Strand 5
c
603 607anti-parallel
Strand 6
c
584 589anti-parallel
Strand 7
c
571 574anti-parallel
Strand 8
c
626 627parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
80 83first strand
Strand 2
f
120 126anti-parallel
Strand 3
f
69 75parallel
Strand 4
f
133 136anti-parallel
Strand 5
f
33 38parallel
Strand 6
f
169 175parallel
Strand 7
f
200 204parallel
Strand 8
f
231 233parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
563 566first strand
Strand 2
f
549 553anti-parallel
Strand 3
f
539 545anti-parallel
Strand 4
f
522 528anti-parallel
Strand 5
f
604 606anti-parallel
Strand 6
f
585 589anti-parallel
Strand 7
f
571 573anti-parallel
Strand 8
f
626 627parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 83first strand
Strand 2
C
120 126anti-parallel
Strand 3
C
69 75parallel
Strand 4
C
132 136anti-parallel
Strand 5
C
33 38parallel
Strand 6
C
169 176parallel
Strand 7
C
201 205parallel
Strand 8
C
231 233parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
563 566first strand
Strand 2
C
549 553anti-parallel
Strand 3
C
539 545anti-parallel
Strand 4
C
522 528anti-parallel
Strand 5
C
603 607anti-parallel
Strand 6
C
584 589anti-parallel
Strand 7
C
571 574anti-parallel
Strand 8
C
626 627parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
80 83first strand
Strand 2
F
120 126anti-parallel
Strand 3
F
69 75parallel
Strand 4
F
133 136anti-parallel
Strand 5
F
33 38parallel
Strand 6
F
169 175parallel
Strand 7
F
200 204parallel
Strand 8
F
231 233parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
563 566first strand
Strand 2
F
549 553anti-parallel
Strand 3
F
539 545anti-parallel
Strand 4
F
522 528anti-parallel
Strand 5
F
604 606anti-parallel
Strand 6
F
585 589anti-parallel
Strand 7
F
571 573anti-parallel
Strand 8
F
626 627parallel
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