Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TYO entry

There are 3 chains in PDB entry 8TYO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	PRO 1140
B	ALA 27	PRO 1140
C	ALA 27	PRO 1140

There are 51 helices in PDB entry 8TYO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	630	635	Right-handed alpha
Helix 3	AA3	A	636	638	Right-handed 310
Helix 4	AA4	A	737	743	Right-handed alpha
Helix 5	AA5	A	746	754	Right-handed alpha
Helix 6	AA6	A	755	757	Right-handed 310
Helix 7	AA7	A	758	783	Right-handed alpha
Helix 8	AA8	A	816	826	Right-handed alpha
Helix 9	AA9	A	866	885	Right-handed alpha
Helix 10	AB1	A	886	891	Right-handed alpha
Helix 11	AB2	A	897	910	Right-handed alpha
Helix 12	AB3	A	912	919	Right-handed alpha
Helix 13	AB4	A	919	941	Right-handed alpha
Helix 14	AB5	A	945	965	Right-handed alpha
Helix 15	AB6	A	966	968	Right-handed 310
Helix 16	AB7	A	976	984	Right-handed alpha
Helix 17	AB8	A	985	990	Right-handed alpha
Helix 18	AB9	A	991	1032	Right-handed alpha
Helix 19	AC1	B	294	304	Right-handed alpha
Helix 20	AC2	B	737	743	Right-handed alpha
Helix 21	AC3	B	746	754	Right-handed alpha
Helix 22	AC4	B	755	757	Right-handed 310
Helix 23	AC5	B	758	783	Right-handed alpha
Helix 24	AC6	B	816	826	Right-handed alpha
Helix 25	AC7	B	866	885	Right-handed alpha
Helix 26	AC8	B	897	910	Right-handed alpha
Helix 27	AC9	B	912	919	Right-handed alpha
Helix 28	AD1	B	919	941	Right-handed alpha
Helix 29	AD2	B	945	965	Right-handed alpha
Helix 30	AD3	B	966	968	Right-handed 310
Helix 31	AD4	B	976	982	Right-handed alpha
Helix 32	AD5	B	985	1032	Right-handed alpha
Helix 33	AD6	C	294	304	Right-handed alpha
Helix 34	AD7	C	337	343	Right-handed alpha
Helix 35	AD8	C	349	353	Right-handed 310
Helix 36	AD9	C	364	370	Right-handed alpha
Helix 37	AE1	C	383	388	Right-handed alpha
Helix 38	AE2	C	403	407	Right-handed 310
Helix 39	AE3	C	416	422	Right-handed alpha
Helix 40	AE4	C	737	744	Right-handed alpha
Helix 41	AE5	C	746	754	Right-handed alpha
Helix 42	AE6	C	755	757	Right-handed 310
Helix 43	AE7	C	758	783	Right-handed alpha
Helix 44	AE8	C	816	826	Right-handed alpha
Helix 45	AE9	C	866	884	Right-handed alpha
Helix 46	AF1	C	897	910	Right-handed alpha
Helix 47	AF2	C	912	919	Right-handed alpha
Helix 48	AF3	C	919	941	Right-handed alpha
Helix 49	AF4	C	945	965	Right-handed alpha
Helix 50	AF5	C	976	984	Right-handed alpha
Helix 51	AF6	C	985	1033	Right-handed alpha

There are 39 sheets in PDB entry 8TYO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	61	65	anti-parallel
Strand 3	A	265	269	anti-parallel
Strand 4	A	89	94	anti-parallel
Strand 5	A	188	195	anti-parallel
Strand 6	A	201	209	anti-parallel
Strand 7	A	224	229	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	C	565	567	parallel
Strand 3	C	573	577	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	546	554	anti-parallel
Strand 6	C	538	543	anti-parallel
Strand 7	C	325	328	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	241	anti-parallel
Strand 3	A	103	107	anti-parallel
Strand 4	A	117	119	anti-parallel
Strand 5	A	126	129	anti-parallel
Strand 6	A	169	172	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	319	first strand
Strand 2	A	592	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	645	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	538	543	parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	573	577	anti-parallel
Strand 6	A	565	567	anti-parallel
Strand 7	B	42	43	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	691	696	parallel
Strand 3	A	670	675	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	704	first strand
Strand 2	B	787	790	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	715	first strand
Strand 2	A	1072	1076	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	728	first strand
Strand 2	A	1059	1069	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	858	861	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	790	first strand
Strand 2	C	701	704	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1097	first strand
Strand 2	A	1102	1105	anti-parallel
Strand 3	A	1113	1114	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	64	anti-parallel
Strand 3	B	266	269	anti-parallel
Strand 4	B	90	93	anti-parallel
Strand 5	B	190	196	anti-parallel
Strand 6	B	201	207	anti-parallel
Strand 7	B	222	229	anti-parallel
Strand 8	B	36	37	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	120	first strand
Strand 2	B	103	107	anti-parallel
Strand 3	B	237	241	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	169	171	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	612	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	645	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	543	first strand
Strand 2	B	546	554	anti-parallel
Strand 3	B	584	588	anti-parallel
Strand 4	B	573	577	anti-parallel
Strand 5	B	565	567	anti-parallel
Strand 6	C	42	43	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	693	696	parallel
Strand 3	B	670	673	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	703	first strand
Strand 2	C	787	789	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	715	first strand
Strand 2	B	1072	1076	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	728	first strand
Strand 2	B	1059	1069	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	735	first strand
Strand 2	B	859	861	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1081	1082	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1120	1125	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1097	first strand
Strand 2	B	1102	1105	anti-parallel
Strand 3	B	1113	1114	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	61	65	anti-parallel
Strand 3	C	265	268	anti-parallel
Strand 4	C	90	94	anti-parallel
Strand 5	C	190	197	anti-parallel
Strand 6	C	200	207	anti-parallel
Strand 7	C	224	229	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	126	129	anti-parallel
Strand 3	C	117	121	anti-parallel
Strand 4	C	103	106	anti-parallel
Strand 5	C	239	240	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	319	first strand
Strand 2	C	592	599	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	642	645	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	395	401	anti-parallel
Strand 3	C	509	514	anti-parallel
Strand 4	C	431	436	anti-parallel
Strand 5	C	376	380	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	691	696	parallel
Strand 3	C	670	675	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	715	first strand
Strand 2	C	1072	1076	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	728	first strand
Strand 2	C	1059	1069	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	736	first strand
Strand 2	C	858	861	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1122	first strand
Strand 2	C	1087	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1094	1097	first strand
Strand 2	C	1102	1105	anti-parallel
Strand 3	C	1113	1114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TYO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYO