Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TYP entry

There is 1 chain in PDB entry 8TYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 357SER 683
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8TYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
473 478Right-handed alpha
Helix 2
AA2
A
554 558Right-handed 310
Helix 3
AA3
A
591 598Right-handed alpha
Helix 4
AA4
A
671 681Right-handed alpha
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There are 4 sheets in PDB entry 8TYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
381 386anti-parallel
Strand 3
A
400 403anti-parallel
Strand 4
A
409 410anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
421 423anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 443first strand
Strand 2
A
583 590anti-parallel
Strand 3
A
616 620anti-parallel
Strand 4
A
662 667anti-parallel
Strand 5
A
647 655anti-parallel
Strand 6
A
635 639anti-parallel
Strand 7
A
564 569anti-parallel
Strand 8
A
583 590anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 503first strand
Strand 2
A
485 487anti-parallel
Strand 3
A
452 455anti-parallel
Strand 4
A
460 466anti-parallel
Strand 5
A
469 472anti-parallel
Strand 6
A
531 535anti-parallel
Strand 7
A
505 510anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il