Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TYQ entry

There are 2 chains in PDB entry 8TYQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1335	SER 2525
B	ASN 43	ALA 155

There are 41 helices in PDB entry 8TYQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1346	1354	Right-handed alpha
Helix 2	AA2	A	1424	1429	Right-handed alpha
Helix 3	AA3	A	1431	1437	Right-handed alpha
Helix 4	AA4	A	1453	1457	Right-handed 310
Helix 5	AA5	A	1458	1469	Right-handed alpha
Helix 6	AA6	A	1499	1508	Right-handed alpha
Helix 7	AA7	A	1563	1568	Right-handed 310
Helix 8	AA8	A	1569	1579	Right-handed alpha
Helix 9	AA9	A	1631	1636	Right-handed alpha
Helix 10	AB1	A	1642	1646	Right-handed 310
Helix 11	AB2	A	1651	1656	Right-handed alpha
Helix 12	AB3	A	1686	1688	Right-handed 310
Helix 13	AB4	A	1703	1712	Right-handed alpha
Helix 14	AB5	A	1770	1791	Right-handed alpha
Helix 15	AB6	A	1792	1796	Right-handed 310
Helix 16	AB7	A	1830	1837	Right-handed alpha
Helix 17	AB8	A	1851	1855	Right-handed 310
Helix 18	AB9	A	1871	1873	Right-handed 310
Helix 19	AC1	A	1884	1889	Right-handed 310
Helix 20	AC2	A	1914	1925	Right-handed alpha
Helix 21	AC3	A	1954	1961	Right-handed alpha
Helix 22	AC4	A	1967	1988	Right-handed alpha
Helix 23	AC5	A	1996	1998	Right-handed 310
Helix 24	AC6	A	2052	2068	Right-handed alpha
Helix 25	AC7	A	2094	2100	Right-handed alpha
Helix 26	AC8	A	2107	2115	Right-handed alpha
Helix 27	AC9	A	2118	2122	Right-handed 310
Helix 28	AD1	A	2124	2133	Right-handed alpha
Helix 29	AD2	A	2134	2139	Right-handed alpha
Helix 30	AD3	A	2278	2280	Right-handed 310
Helix 31	AD4	A	2339	2344	Right-handed 310
Helix 32	AD5	A	2346	2351	Right-handed alpha
Helix 33	AD6	A	2389	2396	Right-handed alpha
Helix 34	AD7	A	2499	2525	Right-handed alpha
Helix 35	AD8	B	51	60	Right-handed alpha
Helix 36	AD9	B	61	72	Right-handed alpha
Helix 37	AE1	B	84	93	Right-handed alpha
Helix 38	AE2	B	94	104	Right-handed alpha
Helix 39	AE3	B	117	125	Right-handed alpha
Helix 40	AE4	B	129	137	Right-handed alpha
Helix 41	AE5	B	150	155	Right-handed alpha

There are 13 sheets in PDB entry 8TYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1372	1376	first strand
Strand 2	A	1390	1394	anti-parallel
Strand 3	A	1337	1341	parallel
Strand 4	A	1414	1420	parallel
Strand 5	A	1446	1452	parallel
Strand 6	A	1481	1486	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1752	1753	first strand
Strand 2	A	1761	1768	anti-parallel
Strand 3	A	1690	1697	anti-parallel
Strand 4	A	1809	1814	anti-parallel
Strand 5	A	1823	1826	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1730	1734	first strand
Strand 2	A	1737	1741	anti-parallel
Strand 3	A	1747	1749	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1840	1841	first strand
Strand 2	A	1849	1850	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1875	1877	first strand
Strand 2	A	1893	1898	anti-parallel
Strand 3	A	1901	1907	anti-parallel
Strand 4	A	1944	1948	anti-parallel
Strand 5	A	1935	1938	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2000	2002	first strand
Strand 2	A	2013	2015	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2140	2145	first strand
Strand 2	A	2491	2497	anti-parallel
Strand 3	A	2468	2475	anti-parallel
Strand 4	A	2454	2462	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2152	2157	first strand
Strand 2	A	2166	2171	anti-parallel
Strand 3	A	2178	2183	anti-parallel
Strand 4	A	2190	2193	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2199	2207	first strand
Strand 2	A	2212	2219	anti-parallel
Strand 3	A	2224	2228	anti-parallel
Strand 4	A	2235	2237	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2245	2249	first strand
Strand 2	A	2262	2267	anti-parallel
Strand 3	A	2271	2276	anti-parallel
Strand 4	A	2289	2292	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2300	2304	first strand
Strand 2	A	2315	2319	anti-parallel
Strand 3	A	2322	2326	anti-parallel
Strand 4	A	2332	2337	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2354	2359	first strand
Strand 2	A	2363	2367	anti-parallel
Strand 3	A	2372	2377	anti-parallel
Strand 4	A	2382	2388	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2414	2420	first strand
Strand 2	A	2424	2429	anti-parallel
Strand 3	A	2434	2438	anti-parallel
Strand 4	A	2443	2448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TYQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYQ