Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TYS entry

There are 6 chains in PDB entry 8TYS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 5	ASN 227
B	SER 3	GLY 228
C	TYR 2	ASN 227
D	LEU 3	SER 228
E	SER 3	ARG 227
F	TYR 2	ASN 227

There are 27 helices in PDB entry 8TYS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	51	Right-handed 310
Helix 2	AA2	A	97	103	Right-handed 310
Helix 3	AA3	A	158	160	Right-handed 310
Helix 4	AA4	A	212	218	Right-handed 310
Helix 5	AA5	B	49	51	Right-handed 310
Helix 6	AA6	B	99	104	Right-handed 310
Helix 7	AA7	B	160	162	Right-handed 310
Helix 8	AA8	B	197	201	Right-handed 310
Helix 9	AA9	B	214	218	Right-handed 310
Helix 10	AB1	C	49	51	Right-handed 310
Helix 11	AB2	C	97	103	Right-handed 310
Helix 12	AB3	C	158	160	Right-handed 310
Helix 13	AB4	C	212	215	Right-handed 310
Helix 14	AB5	D	49	51	Right-handed 310
Helix 15	AB6	D	97	103	Right-handed 310
Helix 16	AB7	D	158	160	Right-handed 310
Helix 17	AB8	D	212	218	Right-handed 310
Helix 18	AB9	E	49	51	Right-handed 310
Helix 19	AC1	E	99	104	Right-handed 310
Helix 20	AC2	E	160	162	Right-handed 310
Helix 21	AC3	E	197	201	Right-handed 310
Helix 22	AC4	E	213	217	Right-handed 310
Helix 23	AC5	F	49	51	Right-handed 310
Helix 24	AC6	F	67	69	Right-handed 310
Helix 25	AC7	F	97	103	Right-handed 310
Helix 26	AC8	F	158	160	Right-handed 310
Helix 27	AC9	F	214	218	Right-handed 310

There are 24 sheets in PDB entry 8TYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	105	111	anti-parallel
Strand 3	A	25	38	anti-parallel
Strand 4	A	53	54	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	25	38	anti-parallel
Strand 3	A	79	83	anti-parallel
Strand 4	A	171	175	anti-parallel
Strand 5	A	180	182	anti-parallel
Strand 6	A	94	95	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	220	226	anti-parallel
Strand 3	C	132	145	anti-parallel
Strand 4	C	162	163	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	153	first strand
Strand 2	C	132	145	anti-parallel
Strand 3	C	188	192	anti-parallel
Strand 4	A	62	65	anti-parallel
Strand 5	A	70	73	anti-parallel
Strand 6	C	207	210	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	220	226	anti-parallel
Strand 3	A	132	147	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	153	first strand
Strand 2	A	132	147	anti-parallel
Strand 3	A	188	192	anti-parallel
Strand 4	B	62	65	anti-parallel
Strand 5	B	70	73	anti-parallel
Strand 6	A	207	210	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	107	113	anti-parallel
Strand 3	B	25	38	anti-parallel
Strand 4	B	53	54	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	44	first strand
Strand 2	B	25	38	anti-parallel
Strand 3	B	79	83	anti-parallel
Strand 4	B	173	177	anti-parallel
Strand 5	B	181	183	anti-parallel
Strand 6	B	96	97	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	121	first strand
Strand 2	B	220	226	anti-parallel
Strand 3	B	134	148	anti-parallel
Strand 4	B	164	165	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	134	148	anti-parallel
Strand 3	B	189	193	anti-parallel
Strand 4	C	62	65	anti-parallel
Strand 5	C	70	73	anti-parallel
Strand 6	B	208	211	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	11	first strand
Strand 2	C	105	111	anti-parallel
Strand 3	C	25	38	anti-parallel
Strand 4	C	53	54	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	44	first strand
Strand 2	C	25	38	anti-parallel
Strand 3	C	79	83	anti-parallel
Strand 4	C	171	175	anti-parallel
Strand 5	C	180	182	anti-parallel
Strand 6	C	94	95	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	105	111	anti-parallel
Strand 3	D	25	38	anti-parallel
Strand 4	D	53	54	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	25	38	anti-parallel
Strand 3	D	79	83	anti-parallel
Strand 4	D	171	175	anti-parallel
Strand 5	D	180	182	anti-parallel
Strand 6	D	94	95	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	220	226	anti-parallel
Strand 3	F	132	145	anti-parallel
Strand 4	F	162	163	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	153	first strand
Strand 2	F	132	145	anti-parallel
Strand 3	F	188	192	anti-parallel
Strand 4	D	62	65	anti-parallel
Strand 5	D	71	73	anti-parallel
Strand 6	F	207	209	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	220	226	anti-parallel
Strand 3	D	132	147	anti-parallel
Strand 4	D	162	163	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	153	first strand
Strand 2	D	132	147	anti-parallel
Strand 3	D	188	192	anti-parallel
Strand 4	E	62	65	anti-parallel
Strand 5	E	70	73	anti-parallel
Strand 6	D	207	210	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	11	first strand
Strand 2	E	107	113	anti-parallel
Strand 3	E	25	38	anti-parallel
Strand 4	E	53	54	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	44	first strand
Strand 2	E	25	38	anti-parallel
Strand 3	E	79	83	anti-parallel
Strand 4	E	173	177	anti-parallel
Strand 5	E	181	183	anti-parallel
Strand 6	E	96	97	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	121	first strand
Strand 2	E	220	226	anti-parallel
Strand 3	E	134	148	anti-parallel
Strand 4	E	164	165	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	155	first strand
Strand 2	E	134	148	anti-parallel
Strand 3	E	189	193	anti-parallel
Strand 4	F	62	65	anti-parallel
Strand 5	F	71	73	anti-parallel
Strand 6	E	208	210	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	105	111	anti-parallel
Strand 3	F	25	38	anti-parallel
Strand 4	F	53	54	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	44	first strand
Strand 2	F	25	38	anti-parallel
Strand 3	F	79	83	anti-parallel
Strand 4	F	171	175	anti-parallel
Strand 5	F	180	182	anti-parallel
Strand 6	F	94	95	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TYS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYS