Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TYW entry

There are 5 chains in PDB entry 8TYW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 72	LEU 344
B	SER 2	ASN 340
C	LYS 8	LEU 394
G	ASN 5	ARG 62
N	GLN 1	SER 128

There are 22 helices in PDB entry 8TYW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	100	Right-handed alpha
Helix 2	AA2	A	105	135	Right-handed alpha
Helix 3	AA3	A	137	172	Right-handed alpha
Helix 4	AA4	A	173	176	Right-handed 310
Helix 5	AA5	A	178	206	Right-handed alpha
Helix 6	AA6	A	223	263	Right-handed alpha
Helix 7	AA7	A	275	302	Right-handed alpha
Helix 8	AA8	A	307	330	Right-handed alpha
Helix 9	AA9	A	333	344	Right-handed alpha
Helix 10	AB1	B	3	25	Right-handed alpha
Helix 11	AB2	B	29	33	Right-handed 310
Helix 12	AB3	C	9	39	Right-handed alpha
Helix 13	AB4	C	52	64	Right-handed alpha
Helix 14	AB5	C	234	238	Right-handed 310
Helix 15	AB6	C	264	278	Right-handed alpha
Helix 16	AB7	C	294	304	Right-handed alpha
Helix 17	AB8	C	308	316	Right-handed 310
Helix 18	AB9	C	331	353	Right-handed alpha
Helix 19	AC1	C	370	391	Right-handed alpha
Helix 20	AC2	G	6	24	Right-handed alpha
Helix 21	AC3	G	29	44	Right-handed alpha
Helix 22	AC4	N	87	91	Right-handed 310

There are 10 sheets in PDB entry 8TYW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	294	297	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	214	first strand
Strand 2	C	217	224	anti-parallel
Strand 3	C	41	46	parallel
Strand 4	C	243	249	parallel
Strand 5	C	286	292	parallel
Strand 6	C	359	362	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	6	first strand
Strand 2	N	21	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	95	anti-parallel
Strand 4	N	35	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TYW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYW