Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TYY entry

There are 2 chains in PDB entry 8TYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 16GLY 97
B
 MET 1SER 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8TYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 50Right-handed alpha
Helix 2
AA2
A
56 58Right-handed 310
Helix 3
AA3
A
75 80Right-handed 310
Helix 4
AA4
B
3 7Right-handed 310
Helix 5
AA5
B
14 29Right-handed alpha
Helix 6
AA6
B
71 86Right-handed alpha
Helix 7
AA7
B
103 109Right-handed alpha
Helix 8
AA8
B
123 127Right-handed 310
Helix 9
AA9
B
150 157Right-handed alpha
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There are 3 sheets in PDB entry 8TYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 33first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
84 91parallel
Strand 4
A
60 63anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
B
66 70anti-parallel
Strand 3
B
58 61anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 149first strand
Strand 2
B
136 140anti-parallel
Strand 3
B
118 122anti-parallel
Strand 4
B
88 95parallel
Strand 5
B
35 43anti-parallel
Strand 6
B
46 53anti-parallel
Strand 7
B
9 13parallel
Strand 8
B
158 161parallel
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