Analysis of interatomic Contacts of Structural Units in PDB entry:
8TYZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TYZ entry

There are 3 chains in PDB entry 8TYZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ASN 508
B
 GLY 16ALA 98
C
 PRO 2GLY 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8TYZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 16Right-handed alpha
Helix 2
AA2
A
22 32Right-handed alpha
Helix 3
AA3
A
40 45Right-handed alpha
Helix 4
AA4
A
46 61Right-handed alpha
Helix 5
AA5
A
76 91Right-handed alpha
Helix 6
AA6
A
146 165Right-handed alpha
Helix 7
AA7
A
211 223Right-handed alpha
Helix 8
AA8
A
240 246Right-handed 310
Helix 9
AA9
A
251 255Right-handed 310
Helix 10
AB1
A
258 267Right-handed alpha
Helix 11
AB2
A
280 289Right-handed alpha
Helix 12
AB3
A
302 312Right-handed alpha
Helix 13
AB4
A
342 346Right-handed 310
Helix 14
AB5
A
353 362Right-handed alpha
Helix 15
AB6
A
364 366Right-handed 310
Helix 16
AB7
A
367 377Right-handed alpha
Helix 17
AB8
A
382 394Right-handed alpha
Helix 18
AB9
A
396 401Right-handed alpha
Helix 19
AC1
A
402 404Right-handed 310
Helix 20
AC2
A
407 416Right-handed alpha
Helix 21
AC3
A
419 425Right-handed alpha
Helix 22
AC4
A
437 458Right-handed alpha
Helix 23
AC5
A
491 494Right-handed 310
Helix 24
AC6
A
495 507Right-handed alpha
Helix 25
AC7
B
38 50Right-handed alpha
Helix 26
AC8
B
56 58Right-handed 310
Helix 27
AC9
B
75 80Right-handed 310
Helix 28
AD1
C
8 24Right-handed alpha
Helix 29
AD2
C
26 34Right-handed alpha
Helix 30
AD3
C
142 147Right-handed alpha
Helix 31
AD4
C
148 152Right-handed 310
Helix 32
AD5
C
155 159Right-handed 310
Helix 33
AD6
C
166 178Right-handed alpha
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There are 4 sheets in PDB entry 8TYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
66 71parallel
Strand 3
A
35 39parallel
Strand 4
A
105 109parallel
Strand 5
A
120 126parallel
Strand 6
A
129 133anti-parallel
Strand 7
A
177 181anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 277first strand
Strand 2
A
227 234parallel
Strand 3
A
200 208parallel
Strand 4
A
295 298parallel
Strand 5
A
316 322parallel
Strand 6
A
327 333anti-parallel
Strand 7
A
466 469anti-parallel
Strand 8
A
480 481anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 33first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
84 91parallel
Strand 4
B
60 63anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 41first strand
Strand 2
C
44 50anti-parallel
Strand 3
C
59 66anti-parallel
Strand 4
C
76 79anti-parallel
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