Analysis of interatomic Contacts of Structural Units in PDB entry:
8TZB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TZB entry

There are 2 chains in PDB entry 8TZB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1334	ARG 2522
B	GLY 49	LEU 154

There are 35 helices in PDB entry 8TZB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1347	1352	Right-handed alpha
Helix 2	AA2	A	1430	1435	Right-handed alpha
Helix 3	AA3	A	1460	1471	Right-handed alpha
Helix 4	AA4	A	1496	1510	Right-handed alpha
Helix 5	AA5	A	1529	1539	Right-handed alpha
Helix 6	AA6	A	1550	1558	Right-handed alpha
Helix 7	AA7	A	1560	1565	Right-handed 310
Helix 8	AA8	A	1606	1607	Right-handed 310
Helix 9	AA9	A	1609	1612	Right-handed 310
Helix 10	AB1	A	1643	1656	Right-handed alpha
Helix 11	AB2	A	1703	1712	Right-handed alpha
Helix 12	AB3	A	1772	1790	Right-handed alpha
Helix 13	AB4	A	1827	1837	Right-handed alpha
Helix 14	AB5	A	1851	1855	Right-handed 310
Helix 15	AB6	A	1885	1889	Right-handed 310
Helix 16	AB7	A	1914	1925	Right-handed alpha
Helix 17	AB8	A	1954	1961	Right-handed alpha
Helix 18	AB9	A	1967	1988	Right-handed alpha
Helix 19	AC1	A	1996	1998	Right-handed 310
Helix 20	AC2	A	2051	2068	Right-handed alpha
Helix 21	AC3	A	2070	2074	Right-handed 310
Helix 22	AC4	A	2094	2099	Right-handed alpha
Helix 23	AC5	A	2107	2115	Right-handed alpha
Helix 24	AC6	A	2124	2133	Right-handed alpha
Helix 25	AC7	A	2134	2139	Right-handed alpha
Helix 26	AC8	A	2276	2280	Right-handed 310
Helix 27	AC9	A	2339	2341	Right-handed 310
Helix 28	AD1	A	2346	2351	Right-handed alpha
Helix 29	AD2	A	2389	2396	Right-handed alpha
Helix 30	AD3	A	2499	2522	Right-handed alpha
Helix 31	AD4	B	51	59	Right-handed alpha
Helix 32	AD5	B	84	93	Right-handed alpha
Helix 33	AD6	B	94	104	Right-handed alpha
Helix 34	AD7	B	117	125	Right-handed alpha
Helix 35	AD8	B	127	136	Right-handed alpha

There are 13 sheets in PDB entry 8TZB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1373	1376	first strand
Strand 2	A	1390	1395	anti-parallel
Strand 3	A	1335	1341	parallel
Strand 4	A	1415	1418	parallel
Strand 5	A	1447	1450	parallel
Strand 6	A	1485	1486	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1751	1753	first strand
Strand 2	A	1761	1768	anti-parallel
Strand 3	A	1690	1697	anti-parallel
Strand 4	A	1809	1814	anti-parallel
Strand 5	A	1823	1826	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1730	1732	first strand
Strand 2	A	1739	1743	anti-parallel
Strand 3	A	1746	1749	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1840	1841	first strand
Strand 2	A	1849	1850	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1893	1897	first strand
Strand 2	A	1902	1907	anti-parallel
Strand 3	A	1944	1948	anti-parallel
Strand 4	A	1935	1937	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2000	2002	first strand
Strand 2	A	2013	2015	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2140	2148	first strand
Strand 2	A	2490	2497	anti-parallel
Strand 3	A	2469	2474	anti-parallel
Strand 4	A	2457	2461	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2152	2157	first strand
Strand 2	A	2166	2171	anti-parallel
Strand 3	A	2177	2183	anti-parallel
Strand 4	A	2190	2195	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2199	2207	first strand
Strand 2	A	2212	2219	anti-parallel
Strand 3	A	2224	2228	anti-parallel
Strand 4	A	2235	2237	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2245	2249	first strand
Strand 2	A	2264	2267	anti-parallel
Strand 3	A	2273	2274	anti-parallel
Strand 4	A	2289	2290	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2300	2304	first strand
Strand 2	A	2315	2319	anti-parallel
Strand 3	A	2322	2326	anti-parallel
Strand 4	A	2332	2337	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2354	2359	first strand
Strand 2	A	2362	2367	anti-parallel
Strand 3	A	2372	2377	anti-parallel
Strand 4	A	2387	2388	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2414	2418	first strand
Strand 2	A	2425	2429	anti-parallel
Strand 3	A	2434	2437	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TZB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TZB