Analysis of interatomic Contacts of Structural Units in PDB entry:
8TZC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TZC entry

There are 2 chains in PDB entry 8TZC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1333	ARG 2522
B	GLY 17	GLY 159

There are 41 helices in PDB entry 8TZC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1346	1347	Right-handed 310
Helix 2	AA2	A	1349	1349	Right-handed 310
Helix 3	AA3	A	1350	1355	Right-handed alpha
Helix 4	AA4	A	1398	1402	Right-handed 310
Helix 5	AA5	A	1404	1409	Right-handed 310
Helix 6	AA6	A	1502	1508	Right-handed alpha
Helix 7	AA7	A	1573	1580	Right-handed alpha
Helix 8	AA8	A	1587	1591	Right-handed 310
Helix 9	AA9	A	1599	1610	Right-handed alpha
Helix 10	AB1	A	1627	1633	Right-handed alpha
Helix 11	AB2	A	1650	1656	Right-handed alpha
Helix 12	AB3	A	1686	1688	Right-handed 310
Helix 13	AB4	A	1703	1716	Right-handed alpha
Helix 14	AB5	A	1717	1719	Right-handed 310
Helix 15	AB6	A	1770	1792	Right-handed alpha
Helix 16	AB7	A	1793	1797	Right-handed 310
Helix 17	AB8	A	1827	1836	Right-handed alpha
Helix 18	AB9	A	1853	1855	Right-handed 310
Helix 19	AC1	A	1871	1873	Right-handed 310
Helix 20	AC2	A	1880	1882	Right-handed 310
Helix 21	AC3	A	1913	1925	Right-handed alpha
Helix 22	AC4	A	1954	1961	Right-handed alpha
Helix 23	AC5	A	1967	1988	Right-handed alpha
Helix 24	AC6	A	2040	2046	Right-handed alpha
Helix 25	AC7	A	2053	2069	Right-handed alpha
Helix 26	AC8	A	2084	2088	Right-handed 310
Helix 27	AC9	A	2094	2100	Right-handed alpha
Helix 28	AD1	A	2107	2115	Right-handed alpha
Helix 29	AD2	A	2124	2133	Right-handed alpha
Helix 30	AD3	A	2134	2139	Right-handed alpha
Helix 31	AD4	A	2346	2351	Right-handed alpha
Helix 32	AD5	A	2389	2393	Right-handed alpha
Helix 33	AD6	A	2499	2522	Right-handed alpha
Helix 34	AD7	B	20	26	Right-handed alpha
Helix 35	AD8	B	51	60	Right-handed alpha
Helix 36	AD9	B	61	72	Right-handed alpha
Helix 37	AE1	B	84	93	Right-handed alpha
Helix 38	AE2	B	94	104	Right-handed alpha
Helix 39	AE3	B	117	125	Right-handed alpha
Helix 40	AE4	B	127	135	Right-handed alpha
Helix 41	AE5	B	150	158	Right-handed alpha

There are 15 sheets in PDB entry 8TZC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1371	1373	first strand
Strand 2	A	1391	1395	anti-parallel
Strand 3	A	1336	1341	parallel
Strand 4	A	1416	1419	parallel
Strand 5	A	1448	1451	parallel
Strand 6	A	1485	1487	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1582	1583	first strand
Strand 2	A	1597	1598	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1730	1733	first strand
Strand 2	A	1737	1743	anti-parallel
Strand 3	A	1746	1753	anti-parallel
Strand 4	A	1761	1768	anti-parallel
Strand 5	A	1690	1697	anti-parallel
Strand 6	A	1809	1814	anti-parallel
Strand 7	A	1823	1826	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1839	1840	first strand
Strand 2	A	1850	1851	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1875	1876	first strand
Strand 2	A	1891	1898	anti-parallel
Strand 3	A	1884	1887	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1875	1876	first strand
Strand 2	A	1891	1898	anti-parallel
Strand 3	A	1901	1908	anti-parallel
Strand 4	A	1946	1948	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1990	1991	first strand
Strand 2	A	2022	2023	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2000	2002	first strand
Strand 2	A	2013	2015	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2140	2148	first strand
Strand 2	A	2490	2497	anti-parallel
Strand 3	A	2469	2475	anti-parallel
Strand 4	A	2454	2461	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2155	2156	first strand
Strand 2	A	2167	2169	anti-parallel
Strand 3	A	2179	2182	anti-parallel
Strand 4	A	2189	2192	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2199	2203	first strand
Strand 2	A	2216	2219	anti-parallel
Strand 3	A	2224	2226	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2245	2249	first strand
Strand 2	A	2264	2267	anti-parallel
Strand 3	A	2272	2274	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2300	2304	first strand
Strand 2	A	2316	2319	anti-parallel
Strand 3	A	2322	2324	anti-parallel
Strand 4	A	2336	2337	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2354	2359	first strand
Strand 2	A	2362	2367	anti-parallel
Strand 3	A	2372	2377	anti-parallel
Strand 4	A	2383	2388	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2414	2419	first strand
Strand 2	A	2424	2429	anti-parallel
Strand 3	A	2434	2438	anti-parallel
Strand 4	A	2444	2448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TZC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TZC