Analysis of interatomic Contacts of Structural Units in PDB entry:
8TZF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TZF entry

There are 2 chains in PDB entry 8TZF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 587	ARG 2522
B	THR 51	ALA 170

There are 61 helices in PDB entry 8TZF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	587	596	Right-handed alpha
Helix 2	AA2	A	599	611	Right-handed alpha
Helix 3	AA3	A	626	638	Right-handed alpha
Helix 4	AA4	A	644	655	Right-handed alpha
Helix 5	AA5	A	662	669	Right-handed alpha
Helix 6	AA6	A	670	680	Right-handed alpha
Helix 7	AA7	A	689	703	Right-handed alpha
Helix 8	AA8	A	705	718	Right-handed alpha
Helix 9	AA9	A	722	732	Right-handed alpha
Helix 10	AB1	A	743	751	Right-handed alpha
Helix 11	AB2	A	754	764	Right-handed alpha
Helix 12	AB3	A	767	781	Right-handed alpha
Helix 13	AB4	A	784	795	Right-handed alpha
Helix 14	AB5	A	814	822	Right-handed alpha
Helix 15	AB6	A	835	849	Right-handed alpha
Helix 16	AB7	A	997	1002	Right-handed 310
Helix 17	AB8	A	1008	1012	Right-handed 310
Helix 18	AB9	A	1027	1034	Right-handed alpha
Helix 19	AC1	A	1053	1057	Right-handed 310
Helix 20	AC2	A	1101	1106	Right-handed alpha
Helix 21	AC3	A	1189	1194	Right-handed alpha
Helix 22	AC4	A	1213	1217	Right-handed 310
Helix 23	AC5	A	1263	1267	Right-handed 310
Helix 24	AC6	A	1314	1328	Right-handed alpha
Helix 25	AC7	A	1346	1356	Right-handed alpha
Helix 26	AC8	A	1404	1409	Right-handed 310
Helix 27	AC9	A	1427	1429	Right-handed 310
Helix 28	AD1	A	1430	1442	Right-handed alpha
Helix 29	AD2	A	1458	1464	Right-handed alpha
Helix 30	AD3	A	1464	1473	Right-handed alpha
Helix 31	AD4	A	1494	1510	Right-handed alpha
Helix 32	AD5	A	1517	1520	Right-handed 310
Helix 33	AD6	A	1525	1538	Right-handed alpha
Helix 34	AD7	A	1550	1560	Right-handed alpha
Helix 35	AD8	A	1567	1580	Right-handed alpha
Helix 36	AD9	A	1599	1608	Right-handed alpha
Helix 37	AE1	A	1645	1654	Right-handed alpha
Helix 38	AE2	A	1703	1710	Right-handed alpha
Helix 39	AE3	A	1770	1792	Right-handed alpha
Helix 40	AE4	A	1828	1835	Right-handed alpha
Helix 41	AE5	A	1852	1856	Right-handed alpha
Helix 42	AE6	A	1915	1925	Right-handed alpha
Helix 43	AE7	A	1954	1962	Right-handed alpha
Helix 44	AE8	A	1967	1988	Right-handed alpha
Helix 45	AE9	A	2051	2068	Right-handed alpha
Helix 46	AF1	A	2094	2099	Right-handed alpha
Helix 47	AF2	A	2107	2115	Right-handed alpha
Helix 48	AF3	A	2124	2133	Right-handed alpha
Helix 49	AF4	A	2134	2139	Right-handed alpha
Helix 50	AF5	A	2339	2341	Right-handed 310
Helix 51	AF6	A	2346	2351	Right-handed alpha
Helix 52	AF7	A	2389	2396	Right-handed alpha
Helix 53	AF8	A	2499	2521	Right-handed alpha
Helix 54	AF9	B	52	60	Right-handed alpha
Helix 55	AG1	B	61	71	Right-handed alpha
Helix 56	AG2	B	86	93	Right-handed alpha
Helix 57	AG3	B	94	101	Right-handed alpha
Helix 58	AG4	B	118	126	Right-handed alpha
Helix 59	AG5	B	127	137	Right-handed alpha
Helix 60	AG6	B	150	159	Right-handed alpha
Helix 61	AG7	B	160	170	Right-handed alpha

There are 18 sheets in PDB entry 8TZF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	804	first strand
Strand 2	A	986	988	parallel
Strand 3	A	1015	1017	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1063	1064	first strand
Strand 2	A	1087	1089	parallel
Strand 3	A	1111	1113	parallel
Strand 4	A	1133	1135	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1157	1159	first strand
Strand 2	A	1177	1179	parallel
Strand 3	A	1200	1202	parallel
Strand 4	A	1224	1226	parallel
Strand 5	A	1249	1251	parallel
Strand 6	A	1272	1274	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1329	1331	first strand
Strand 2	A	1522	1524	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1373	1376	first strand
Strand 2	A	1389	1394	anti-parallel
Strand 3	A	1334	1339	parallel
Strand 4	A	1414	1415	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1417	1418	first strand
Strand 2	A	1447	1450	parallel
Strand 3	A	1482	1486	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1548	1549	first strand
Strand 2	A	1595	1598	anti-parallel
Strand 3	A	1582	1584	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1690	1694	first strand
Strand 2	A	1763	1768	anti-parallel
Strand 3	A	1746	1752	anti-parallel
Strand 4	A	1740	1743	anti-parallel
Strand 5	A	1730	1731	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1840	1841	first strand
Strand 2	A	1850	1851	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1893	1898	first strand
Strand 2	A	1901	1907	anti-parallel
Strand 3	A	1944	1948	anti-parallel
Strand 4	A	1935	1937	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2000	2002	first strand
Strand 2	A	2013	2015	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2140	2145	first strand
Strand 2	A	2491	2497	anti-parallel
Strand 3	A	2469	2475	anti-parallel
Strand 4	A	2457	2461	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2155	2158	first strand
Strand 2	A	2166	2169	anti-parallel
Strand 3	A	2180	2183	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2215	2219	first strand
Strand 2	A	2222	2227	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2248	2249	first strand
Strand 2	A	2264	2265	anti-parallel
Strand 3	A	2273	2274	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2303	2304	first strand
Strand 2	A	2316	2319	anti-parallel
Strand 3	A	2322	2325	anti-parallel
Strand 4	A	2334	2337	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2354	2358	first strand
Strand 2	A	2363	2367	anti-parallel
Strand 3	A	2372	2376	anti-parallel
Strand 4	A	2387	2388	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2414	2418	first strand
Strand 2	A	2426	2429	anti-parallel
Strand 3	A	2434	2437	anti-parallel
Strand 4	A	2444	2448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TZF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TZF