Analysis of interatomic Contacts of Structural Units in PDB entry:
8TZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TZJ entry

There are 4 chains in PDB entry 8TZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9VAL 228
B
 GLY 9VAL 228
C
 ALA 27VAL 330
D
 ALA 27VAL 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8TZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 58Right-handed alpha
Helix 2
AA2
A
82 89Right-handed alpha
Helix 3
AA3
A
104 110Right-handed alpha
Helix 4
AA4
A
110 116Right-handed alpha
Helix 5
AA5
A
119 134Right-handed alpha
Helix 6
AA6
A
143 147Right-handed 310
Helix 7
AA7
A
148 162Right-handed alpha
Helix 8
AA8
A
178 196Right-handed alpha
Helix 9
AA9
A
205 212Right-handed alpha
Helix 10
AB1
B
49 58Right-handed alpha
Helix 11
AB2
B
82 89Right-handed alpha
Helix 12
AB3
B
104 110Right-handed alpha
Helix 13
AB4
B
110 116Right-handed alpha
Helix 14
AB5
B
119 134Right-handed alpha
Helix 15
AB6
B
143 147Right-handed 310
Helix 16
AB7
B
148 162Right-handed alpha
Helix 17
AB8
B
178 196Right-handed alpha
Helix 18
AB9
B
205 212Right-handed alpha
Helix 19
AC1
C
31 47Right-handed alpha
Helix 20
AC2
C
50 85Right-handed alpha
Helix 21
AC3
C
188 229Right-handed alpha
Helix 22
AC4
C
229 240Right-handed alpha
Helix 23
AC5
C
242 287Right-handed alpha
Helix 24
AC6
C
297 325Right-handed alpha
Helix 25
AC7
D
31 48Right-handed alpha
Helix 26
AC8
D
50 85Right-handed alpha
Helix 27
AC9
D
188 229Right-handed alpha
Helix 28
AD1
D
229 240Right-handed alpha
Helix 29
AD2
D
242 288Right-handed alpha
Helix 30
AD3
D
297 325Right-handed alpha
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There are 8 sheets in PDB entry 8TZJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
11 14anti-parallel
Strand 3
A
67 69anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
27 30anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
198 202parallel
Strand 3
A
167 171parallel
Strand 4
A
90 93parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
219 221parallel
Strand 3
A
224 225anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
11 14anti-parallel
Strand 3
B
67 69anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
27 30anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
198 202parallel
Strand 3
B
167 171parallel
Strand 4
B
90 93parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
219 221parallel
Strand 3
B
224 225anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il