Analysis of interatomic Contacts of Structural Units in PDB entry:
8TZN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TZN entry

There are 6 chains in PDB entry 8TZN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	VAL 4	THR 158
G	GLN 1	LYS 225
H	SER 1	PRO 210
A	VAL 4	LYS 159
B	VAL 2	PRO 135
D	TYR 2	LEU 108

There are 21 helices in PDB entry 8TZN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	5	14	Right-handed alpha
Helix 2	AA2	C	14	21	Right-handed alpha
Helix 3	AA3	C	26	36	Right-handed alpha
Helix 4	AA4	C	97	113	Right-handed alpha
Helix 5	AA5	C	114	123	Right-handed alpha
Helix 6	AA6	C	125	140	Right-handed alpha
Helix 7	AA7	C	141	144	Right-handed 310
Helix 8	AA8	C	149	151	Right-handed 310
Helix 9	AA9	G	62	65	Right-handed 310
Helix 10	AB1	G	172	174	Right-handed 310
Helix 11	AB2	H	26	30	Right-handed 310
Helix 12	AB3	H	123	129	Right-handed alpha
Helix 13	AB4	H	183	188	Right-handed alpha
Helix 14	AB5	A	5	20	Right-handed alpha
Helix 15	AB6	A	26	38	Right-handed alpha
Helix 16	AB7	A	97	113	Right-handed alpha
Helix 17	AB8	A	114	122	Right-handed alpha
Helix 18	AB9	A	125	140	Right-handed alpha
Helix 19	AC1	A	149	151	Right-handed 310
Helix 20	AC2	D	78	82	Right-handed 310
Helix 21	AC3	D	92	96	Right-handed 310

There are 17 sheets in PDB entry 8TZN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	48	50	anti-parallel
Strand 3	C	85	94	parallel
Strand 4	C	63	75	anti-parallel
Strand 5	C	153	154	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	123	127	parallel
Strand 3	G	92	100	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	46	52	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	123	127	parallel
Strand 3	G	92	100	anti-parallel
Strand 4	G	115	119	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	136	138	first strand
Strand 2	G	157	161	anti-parallel
Strand 3	G	192	195	anti-parallel
Strand 4	G	185	186	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	170	first strand
Strand 2	G	212	216	anti-parallel
Strand 3	G	221	223	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	23	first strand
Strand 2	H	69	74	anti-parallel
Strand 3	H	61	65	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	47	first strand
Strand 2	H	33	37	anti-parallel
Strand 3	H	84	89	anti-parallel
Strand 4	H	98	99	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	120	first strand
Strand 2	H	132	140	anti-parallel
Strand 3	H	174	182	anti-parallel
Strand 4	H	161	163	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	120	first strand
Strand 2	H	132	140	anti-parallel
Strand 3	H	174	182	anti-parallel
Strand 4	H	167	168	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	48	50	anti-parallel
Strand 3	A	85	95	parallel
Strand 4	A	53	55	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	48	50	anti-parallel
Strand 3	A	85	95	parallel
Strand 4	A	63	75	anti-parallel
Strand 5	A	153	154	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	21	24	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	46	52	anti-parallel
Strand 3	B	33	39	anti-parallel
Strand 4	B	93	97	anti-parallel
Strand 5	B	123	124	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	103	107	parallel
Strand 3	D	84	89	anti-parallel
Strand 4	D	32	37	anti-parallel
Strand 5	D	44	47	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	103	107	parallel
Strand 3	D	84	89	anti-parallel
Strand 4	D	98	99	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	61	66	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TZN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TZN