Analysis of interatomic Contacts of Structural Units in PDB entry:
8TZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TZP entry

There are 3 chains in PDB entry 8TZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 37LYS 349
B
 GLY 3ASN 498
C
 ASN 209SER 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8TZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 41Right-handed 310
Helix 2
AA2
A
45 55Right-handed alpha
Helix 3
AA3
A
55 77Right-handed alpha
Helix 4
AA4
A
101 125Right-handed alpha
Helix 5
AA5
A
147 151Right-handed alpha
Helix 6
AA6
A
154 170Right-handed alpha
Helix 7
AA7
A
175 195Right-handed alpha
Helix 8
AA8
A
220 233Right-handed alpha
Helix 9
AA9
A
303 308Right-handed alpha
Helix 10
AB1
B
4 8Right-handed 310
Helix 11
AB2
B
10 35Right-handed alpha
Helix 12
AB3
B
76 81Right-handed 310
Helix 13
AB4
B
121 125Right-handed 310
Helix 14
AB5
B
169 173Right-handed 310
Helix 15
AB6
B
227 258Right-handed alpha
Helix 16
AB7
B
264 282Right-handed alpha
Helix 17
AB8
B
283 288Right-handed 310
Helix 18
AB9
B
295 322Right-handed alpha
Helix 19
AC1
B
331 334Right-handed 310
Helix 20
AC2
B
335 357Right-handed alpha
Helix 21
AC3
B
358 362Right-handed 310
Helix 22
AC4
B
367 370Right-handed 310
Helix 23
AC5
B
371 414Right-handed alpha
Helix 24
AC6
B
418 456Right-handed alpha
Helix 25
AC7
B
469 492Right-handed alpha
Helix 26
AC8
C
210 219Right-handed 310
Helix 27
AC9
C
222 236Right-handed alpha
Helix 28
AD1
C
238 250Right-handed alpha
Helix 29
AD2
C
258 270Right-handed alpha
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There are 6 sheets in PDB entry 8TZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 202first strand
Strand 2
A
212 217anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 254first strand
Strand 2
A
236 240anti-parallel
Strand 3
A
269 270parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
344 348anti-parallel
Strand 3
A
313 317anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 46first strand
Strand 2
B
216 226anti-parallel
Strand 3
B
110 118anti-parallel
Strand 4
B
182 187anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
90 95anti-parallel
Strand 3
B
194 200anti-parallel
Strand 4
B
131 141anti-parallel
Strand 5
B
149 159anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
459 462first strand
Strand 2
B
465 468anti-parallel
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