Analysis of interatomic Contacts of Structural Units in PDB entry:
8TZR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TZR entry

There are 3 chains in PDB entry 8TZR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 40	LYS 352
B	GLY 3	SER 495
C	GLU 18	LYS 377

There are 32 helices in PDB entry 8TZR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	59	Right-handed alpha
Helix 2	AA2	A	61	81	Right-handed alpha
Helix 3	AA3	A	99	104	Right-handed 310
Helix 4	AA4	A	106	130	Right-handed alpha
Helix 5	AA5	A	149	154	Right-handed alpha
Helix 6	AA6	A	156	159	Right-handed 310
Helix 7	AA7	A	160	171	Right-handed alpha
Helix 8	AA8	A	172	175	Right-handed 310
Helix 9	AA9	A	178	198	Right-handed alpha
Helix 10	AB1	A	223	237	Right-handed alpha
Helix 11	AB2	A	306	311	Right-handed alpha
Helix 12	AB3	B	4	9	Right-handed alpha
Helix 13	AB4	B	10	35	Right-handed alpha
Helix 14	AB5	B	76	81	Right-handed 310
Helix 15	AB6	B	121	125	Right-handed 310
Helix 16	AB7	B	169	173	Right-handed 310
Helix 17	AB8	B	227	258	Right-handed alpha
Helix 18	AB9	B	264	282	Right-handed alpha
Helix 19	AC1	B	283	288	Right-handed 310
Helix 20	AC2	B	295	321	Right-handed alpha
Helix 21	AC3	B	331	334	Right-handed 310
Helix 22	AC4	B	335	358	Right-handed alpha
Helix 23	AC5	B	359	362	Right-handed 310
Helix 24	AC6	B	367	370	Right-handed 310
Helix 25	AC7	B	371	412	Right-handed alpha
Helix 26	AC8	B	413	417	Right-handed 310
Helix 27	AC9	B	418	456	Right-handed alpha
Helix 28	AD1	B	469	492	Right-handed alpha
Helix 29	AD2	C	32	36	Right-handed alpha
Helix 30	AD3	C	196	200	Right-handed alpha
Helix 31	AD4	C	302	307	Right-handed 310
Helix 32	AD5	C	335	377	Right-handed alpha

There are 10 sheets in PDB entry 8TZR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	206	first strand
Strand 2	A	214	220	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	258	first strand
Strand 2	A	239	245	anti-parallel
Strand 3	A	272	273	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	326	first strand
Strand 2	A	341	348	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	46	first strand
Strand 2	B	215	226	anti-parallel
Strand 3	B	110	119	anti-parallel
Strand 4	B	182	187	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	48	51	anti-parallel
Strand 3	B	90	95	anti-parallel
Strand 4	B	194	200	anti-parallel
Strand 5	B	131	141	anti-parallel
Strand 6	B	149	159	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	462	first strand
Strand 2	B	465	468	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	25	first strand
Strand 2	C	326	333	anti-parallel
Strand 3	C	65	67	anti-parallel
Strand 4	C	50	52	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	25	first strand
Strand 2	C	326	333	anti-parallel
Strand 3	C	91	98	anti-parallel
Strand 4	C	170	177	anti-parallel
Strand 5	C	181	186	anti-parallel
Strand 6	C	189	195	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	73	84	anti-parallel
Strand 3	C	311	320	anti-parallel
Strand 4	C	105	107	anti-parallel
Strand 5	C	130	137	anti-parallel
Strand 6	C	144	150	anti-parallel
Strand 7	C	153	156	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	73	84	anti-parallel
Strand 3	C	311	320	anti-parallel
Strand 4	C	110	113	anti-parallel
Strand 5	C	130	137	anti-parallel
Strand 6	C	144	150	anti-parallel
Strand 7	C	153	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TZR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TZR